BLASTX nr result

ID: Coptis24_contig00025189 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025189
         (596 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263191.1| PREDICTED: uncharacterized protein LOC100261...    89   2e-29
ref|XP_002305794.1| predicted protein [Populus trichocarpa] gi|2...    94   3e-28
ref|XP_002329783.1| predicted protein [Populus trichocarpa] gi|2...    86   1e-23
emb|CBI23968.3| unnamed protein product [Vitis vinifera]               89   8e-23
ref|XP_002509467.1| conserved hypothetical protein [Ricinus comm...    97   1e-22

>ref|XP_002263191.1| PREDICTED: uncharacterized protein LOC100261530 [Vitis vinifera]
          Length = 309

 Score = 89.4 bits (220), Expect(2) = 2e-29
 Identities = 40/66 (60%), Positives = 48/66 (72%)
 Frame = +1

Query: 397 ESRIRKATKETLKTTQSAGTICICQRPMAQGCRKCLMSDISDGLCKAGYNSAICKSKWKS 576
           E  IR ATKE LK  Q    +C+C RP+  GCR CL+ ++SD L  AGYNSAICKSKW+S
Sbjct: 103 ELGIRNATKEALKEIQMDDNVCVCLRPVVGGCRSCLLREVSDRLRNAGYNSAICKSKWRS 162

Query: 577 SPDIPS 594
           SP+IPS
Sbjct: 163 SPNIPS 168



 Score = 65.5 bits (158), Expect(2) = 2e-29
 Identities = 43/89 (48%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
 Frame = +3

Query: 45  MAKVMGRVPVSHRALMSSFEGVEFT-GDAASLMDMMFEFYEDGEVSMES------CSTNS 203
           MA+   R+P  HR  +S+   + FT G AASL DM F F EDGE   ES      CS N 
Sbjct: 1   MARATARIPAIHRNFLSANLELGFTAGQAASLSDMAFGFLEDGEGWPESFSSTGGCSENG 60

Query: 204 IEDYDYDQVDDEKSPDSSSVEERKVFWEA 290
             D D D  D EK+  SSSVEE K FWE+
Sbjct: 61  ALDDDEDDADKEKN--SSSVEENKNFWES 87


>ref|XP_002305794.1| predicted protein [Populus trichocarpa] gi|222848758|gb|EEE86305.1|
           predicted protein [Populus trichocarpa]
          Length = 306

 Score = 94.4 bits (233), Expect(2) = 3e-28
 Identities = 44/66 (66%), Positives = 50/66 (75%)
 Frame = +1

Query: 397 ESRIRKATKETLKTTQSAGTICICQRPMAQGCRKCLMSDISDGLCKAGYNSAICKSKWKS 576
           ESRIR  +KE LK  Q AGTIC C RPMA  CR CLM+++S  L  AGYNSAICK+KW+S
Sbjct: 99  ESRIRSISKEALKEIQMAGTICGCGRPMAASCRSCLMAEVSSRLRNAGYNSAICKTKWRS 158

Query: 577 SPDIPS 594
           SP IPS
Sbjct: 159 SPGIPS 164



 Score = 56.2 bits (134), Expect(2) = 3e-28
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = +3

Query: 63  RVPVSHRALMSSFEGVEFTGD-AASLMDMMFEFYEDGEVSMESCSTNSIEDYDYDQVDDE 239
           R+P + R LMS+    EF  + AASL DM+F F EDG+ S  S  +    + +  +++DE
Sbjct: 7   RIPFNQRNLMSNINQFEFLDEPAASLSDMVFGFLEDGDWSSGSSGSEGCHENEMLELEDE 66

Query: 240 KSPDSSSVEERKVFWE 287
              ++ +VEE K FWE
Sbjct: 67  GEENNGNVEEDKSFWE 82


>ref|XP_002329783.1| predicted protein [Populus trichocarpa] gi|222870845|gb|EEF07976.1|
           predicted protein [Populus trichocarpa]
          Length = 307

 Score = 86.3 bits (212), Expect(2) = 1e-23
 Identities = 41/66 (62%), Positives = 49/66 (74%)
 Frame = +1

Query: 397 ESRIRKATKETLKTTQSAGTICICQRPMAQGCRKCLMSDISDGLCKAGYNSAICKSKWKS 576
           ES IR  TK+ LK  Q AG  C C RPMA GCR CLM+++S  L  AG+NSAICK+KW+S
Sbjct: 100 ESSIRSITKDALKERQMAGN-CGCGRPMAAGCRSCLMAEVSSRLRNAGHNSAICKTKWRS 158

Query: 577 SPDIPS 594
           SPDIP+
Sbjct: 159 SPDIPA 164



 Score = 48.9 bits (115), Expect(2) = 1e-23
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 63  RVPVSHRALMSSFEGVEFTGDAA-SLMDMMFEFYEDGEVSMESCSTNSIEDYDYDQVDDE 239
           R+P   + LMS+    E     A SL DM+F F EDGE   ES S+    +     +++E
Sbjct: 8   RIPFDQQNLMSNVNQFELLDQPAPSLSDMVFGFLEDGESWSESGSSEGYHENKIMDLEEE 67

Query: 240 KSPDSSSVEERKVFWE 287
           +  ++ +VEE + FWE
Sbjct: 68  EEENNGNVEENRSFWE 83


>emb|CBI23968.3| unnamed protein product [Vitis vinifera]
          Length = 275

 Score = 89.4 bits (220), Expect(2) = 8e-23
 Identities = 40/66 (60%), Positives = 48/66 (72%)
 Frame = +1

Query: 397 ESRIRKATKETLKTTQSAGTICICQRPMAQGCRKCLMSDISDGLCKAGYNSAICKSKWKS 576
           E  IR ATKE LK  Q    +C+C RP+  GCR CL+ ++SD L  AGYNSAICKSKW+S
Sbjct: 69  ELGIRNATKEALKEIQMDDNVCVCLRPVVGGCRSCLLREVSDRLRNAGYNSAICKSKWRS 128

Query: 577 SPDIPS 594
           SP+IPS
Sbjct: 129 SPNIPS 134



 Score = 43.1 bits (100), Expect(2) = 8e-23
 Identities = 28/55 (50%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
 Frame = +3

Query: 144 MMFEFYEDGEVSMES------CSTNSIEDYDYDQVDDEKSPDSSSVEERKVFWEA 290
           M F F EDGE   ES      CS N   D D D  D EK+  SSSVEE K FWE+
Sbjct: 1   MAFGFLEDGEGWPESFSSTGGCSENGALDDDEDDADKEKN--SSSVEENKNFWES 53


>ref|XP_002509467.1| conserved hypothetical protein [Ricinus communis]
           gi|223549366|gb|EEF50854.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 308

 Score = 97.1 bits (240), Expect(2) = 1e-22
 Identities = 45/66 (68%), Positives = 51/66 (77%)
 Frame = +1

Query: 397 ESRIRKATKETLKTTQSAGTICICQRPMAQGCRKCLMSDISDGLCKAGYNSAICKSKWKS 576
           ES IR  TKET+K  Q AGT C C +PM  GCRKCLM+++S  L  AGYNSAICKSKW+S
Sbjct: 101 ESGIRNITKETIKEIQMAGTTCGCGKPMVGGCRKCLMAEVSGRLRNAGYNSAICKSKWRS 160

Query: 577 SPDIPS 594
           SPDIPS
Sbjct: 161 SPDIPS 166



 Score = 34.7 bits (78), Expect(2) = 1e-22
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 63  RVPVSHRALMSSFEGVEFTGDA-ASLMDMMFEFYEDGEVSMESCSTNSIEDYDYDQVDDE 239
           R+P+  +    + +  +F      S  DM+F F E GE      S +S + Y+ + +D+E
Sbjct: 7   RIPIYQQDFPVNSQEFDFHDQPMGSFSDMVFGFLEHGEDQSFQASPSSEDSYENEALDEE 66

Query: 240 --KSPDSSSVEERKVFWE 287
             +  ++   +E K FW+
Sbjct: 67  EDEEKENGGFQEDKSFWD 84


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