BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025144
         (1109 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi...   518   e-145
ref|XP_002532904.1| pentatricopeptide repeat-containing protein,...   503   e-140
ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi...   477   e-132
ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containi...   469   e-130
ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containi...   468   e-129

>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
            [Vitis vinifera]
          Length = 594

 Score =  518 bits (1335), Expect = e-145
 Identities = 252/362 (69%), Positives = 287/362 (79%), Gaps = 3/362 (0%)
 Frame = -2

Query: 1078 AFSVFFDMQRNSVFADNFAYPFLVKAC---FLFKQVQMIHTHVEKFGFLNDIFVPNALID 908
            AFSVFF+MQ + V ADNF YPFL+KAC      + V+MIH  VEK GF  DIFVPN+LID
Sbjct: 99   AFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLID 158

Query: 907  SYCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDAVSWN 728
            SY KCGL GV  ARK+F  M+ERD VSWNSMI GLVK GELGEARRLFDEMPERD VSWN
Sbjct: 159  SYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWN 218

Query: 727  TVLDGYAKAGEMSAAFELFGKMPERNVVSWSTMVSGYSKSGDMDMARMMFDKMPVKNLVP 548
            T+LDGY KAGEM+AAFELF KMP RNVVSWSTMV GYSK+GDMDMAR++FDKMPVKNLVP
Sbjct: 219  TILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVP 278

Query: 547  WTIMISGYAEKGFAKQAFTLYDQMERSGLKPDNGTFXXXXXXXXXXXXXXXXXXIHTSVG 368
            WTIMISGYAEKG AK A  LY+QME +GLK D+GT                   +H S+ 
Sbjct: 279  WTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIE 338

Query: 367  RSRFRHSTQVCNALVDMYAKCGSLDRAMKVFDGMVERDVVSWNSILQGLAMHGHGERALE 188
            R+RF+ ST V NAL+DMYAKCGSL+ A+ +F GMV +DVVSWN+I+QGLAMHGHGE+AL+
Sbjct: 339  RTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQ 398

Query: 187  LFSRMSREGFTPDGVTFIGVLCACTHGGLVDDGRRYFSIMEKDYGIVPQVEHYGCMIDLL 8
            LFSRM  EGF PD VTF+GVLCACTH G VD+G  YF  ME+DYG+ P+VEHYGCM+DLL
Sbjct: 399  LFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLL 458

Query: 7    GR 2
            GR
Sbjct: 459  GR 460


>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 604

 Score =  503 bits (1296), Expect = e-140
 Identities = 243/372 (65%), Positives = 288/372 (77%), Gaps = 3/372 (0%)
 Frame = -2

Query: 1108 AYTQNLLYGKAFSVFFDMQRNSVFADNFAYPFLVKACF---LFKQVQMIHTHVEKFGFLN 938
            A+ QN    KAF+ FFDMQ+N +FADNF YPFL+KAC        VQMIH HVEK+GF  
Sbjct: 95   AHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFG 154

Query: 937  DIFVPNALIDSYCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDE 758
            D+FVPN+LIDSY KCGL GV+ A KLF  M E+D+VSWNSMI GLVK+G+LG AR+LFDE
Sbjct: 155  DLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDE 214

Query: 757  MPERDAVSWNTVLDGYAKAGEMSAAFELFGKMPERNVVSWSTMVSGYSKSGDMDMARMMF 578
            M ERDAVSWNT+LDGY KAGEMS AF LF KMPERNVVSWSTMVSGY K+GDM+MARM+F
Sbjct: 215  MAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLF 274

Query: 577  DKMPVKNLVPWTIMISGYAEKGFAKQAFTLYDQMERSGLKPDNGTFXXXXXXXXXXXXXX 398
            DKMP KNLV WTI+ISG+AEKG AK+A TLY+QME +GLKPD+GT               
Sbjct: 275  DKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLV 334

Query: 397  XXXXIHTSVGRSRFRHSTQVCNALVDMYAKCGSLDRAMKVFDGMVERDVVSWNSILQGLA 218
                +H S+ + R + S  V NALVDMYAKCG +D+A+ +F+ M  RD+VSWN +LQGLA
Sbjct: 335  LGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLA 394

Query: 217  MHGHGERALELFSRMSREGFTPDGVTFIGVLCACTHGGLVDDGRRYFSIMEKDYGIVPQV 38
            MHGHGE+A++LFS+M +EGF PD VT I +LCACTH G VD G  YF+ ME+D+GIVP +
Sbjct: 395  MHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHI 454

Query: 37   EHYGCMIDLLGR 2
            EHYGCMIDLLGR
Sbjct: 455  EHYGCMIDLLGR 466


>ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like
            [Glycine max]
          Length = 604

 Score =  477 bits (1228), Expect = e-132
 Identities = 233/362 (64%), Positives = 275/362 (75%), Gaps = 4/362 (1%)
 Frame = -2

Query: 1075 FSVFFDMQRNSVFADNFAYPFLVKACF---LFKQVQMIHTHVEKFGFLNDIFVPNALIDS 905
            F+ FF MQ+N +F DNF YPFL+KAC        V+MIH HVEKFGF  DIFVPN+LIDS
Sbjct: 105  FNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDS 164

Query: 904  YCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDAVSWNT 725
            Y +CG  G+D A  LF AM ERDVV+WNSMI GLV+ GEL  A +LFDEMPERD VSWNT
Sbjct: 165  YSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNT 224

Query: 724  VLDGYAKAGEMSAAFELFGKMPERNVVSWSTMVSGYSKSGDMDMARMMFDKMPVKNLVPW 545
            +LDGYAKAGEM  AFELF +MP+RN+VSWSTMV GYSK GDMDMAR++FD+ P KN+V W
Sbjct: 225  MLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLW 284

Query: 544  TIMISGYAEKGFAKQAFTLYDQMERSGLKPDNGTFXXXXXXXXXXXXXXXXXXIHTSVGR 365
            T +I+GYAEKGF ++A  LY +ME +GL+PD+G                    IH S+ R
Sbjct: 285  TTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRR 344

Query: 364  SRFRHSTQVCNALVDMYAKCGSLDRAMKVFDGMV-ERDVVSWNSILQGLAMHGHGERALE 188
             RFR  T+V NA +DMYAKCG LD A  VF GM+ ++DVVSWNS++QG AMHGHGE+ALE
Sbjct: 345  WRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALE 404

Query: 187  LFSRMSREGFTPDGVTFIGVLCACTHGGLVDDGRRYFSIMEKDYGIVPQVEHYGCMIDLL 8
            LFSRM  EGF PD  TF+G+LCACTH GLV++GR+YF  MEK YGIVPQVEHYGCM+DLL
Sbjct: 405  LFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLL 464

Query: 7    GR 2
            GR
Sbjct: 465  GR 466


>ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like
            [Glycine max]
          Length = 604

 Score =  469 bits (1208), Expect = e-130
 Identities = 230/362 (63%), Positives = 273/362 (75%), Gaps = 4/362 (1%)
 Frame = -2

Query: 1075 FSVFFDMQRNSVFADNFAYPFLVKACF---LFKQVQMIHTHVEKFGFLNDIFVPNALIDS 905
            F+ FF MQ+N +F DNF YPFL+KAC        V+MIH HVEK GF  DIFVPN+LIDS
Sbjct: 105  FNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDS 164

Query: 904  YCKCGLGGVDVARKLFYAMSERDVVSWNSMISGLVKSGELGEARRLFDEMPERDAVSWNT 725
            Y +CG  G+D A  LF AM ERDVV+WNSMI GLV+ GEL  A +LFDEMP+RD VSWNT
Sbjct: 165  YSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNT 224

Query: 724  VLDGYAKAGEMSAAFELFGKMPERNVVSWSTMVSGYSKSGDMDMARMMFDKMPVKNLVPW 545
            +LDGYAKAGEM  AFELF +MP RN+VSWSTMV GYSK GDMDMARM+FD+ PVKN+V W
Sbjct: 225  MLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLW 284

Query: 544  TIMISGYAEKGFAKQAFTLYDQMERSGLKPDNGTFXXXXXXXXXXXXXXXXXXIHTSVGR 365
            T +I+GYAEKG A++A  LY +ME +G++PD+G                    IH S+ R
Sbjct: 285  TTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRR 344

Query: 364  SRFRHSTQVCNALVDMYAKCGSLDRAMKVFDGMV-ERDVVSWNSILQGLAMHGHGERALE 188
             RFR   +V NA +DMYAKCG LD A  VF GM+ ++DVVSWNS++QG AMHGHGE+ALE
Sbjct: 345  WRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALE 404

Query: 187  LFSRMSREGFTPDGVTFIGVLCACTHGGLVDDGRRYFSIMEKDYGIVPQVEHYGCMIDLL 8
            LFS M +EGF PD  TF+G+LCACTH GLV++GR+YF  MEK YGIVPQVEHYGCM+DLL
Sbjct: 405  LFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLL 464

Query: 7    GR 2
            GR
Sbjct: 465  GR 466


>ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like
            [Cucumis sativus]
          Length = 601

 Score =  468 bits (1203), Expect = e-129
 Identities = 223/373 (59%), Positives = 283/373 (75%), Gaps = 4/373 (1%)
 Frame = -2

Query: 1108 AYTQNLLYGKAFSVFFDMQRNSVFADNFAYPFLVKAC---FLFKQVQMIHTHVEKFGFLN 938
            A++ N    +AF+ FF MQR+  +ADNF +PFL+K C        ++ +H  +EKFGF++
Sbjct: 92   AHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMS 151

Query: 937  DIFVPNALIDSYCKCGLGGVDVARKLFYAM-SERDVVSWNSMISGLVKSGELGEARRLFD 761
            D+FVPN+LIDSY KCG  G+  A+KLF +M + RDVVSWNSMISGL K G   EAR++FD
Sbjct: 152  DVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFD 211

Query: 760  EMPERDAVSWNTVLDGYAKAGEMSAAFELFGKMPERNVVSWSTMVSGYSKSGDMDMARMM 581
            EMPE+D +SWNT+LDGY K G+M  AF+LF +MPERNVVSWSTMV GY K+GDM+MARM+
Sbjct: 212  EMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARML 271

Query: 580  FDKMPVKNLVPWTIMISGYAEKGFAKQAFTLYDQMERSGLKPDNGTFXXXXXXXXXXXXX 401
            FDKMPVKNLV WTI++SG+AEKG A++A +L+DQME++ LK DNGT              
Sbjct: 272  FDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLL 331

Query: 400  XXXXXIHTSVGRSRFRHSTQVCNALVDMYAKCGSLDRAMKVFDGMVERDVVSWNSILQGL 221
                 IH S+  + F+ +T++ NALVDMYAKCG L+ A  VF+ +  +DVVSWN++LQGL
Sbjct: 332  GLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGL 391

Query: 220  AMHGHGERALELFSRMSREGFTPDGVTFIGVLCACTHGGLVDDGRRYFSIMEKDYGIVPQ 41
            AMHGHG +ALELF RM  EGF+P+ VT IGVLCACTH GL+DDG RYFS ME+DY +VP+
Sbjct: 392  AMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPE 451

Query: 40   VEHYGCMIDLLGR 2
            VEHYGCM+DLLGR
Sbjct: 452  VEHYGCMVDLLGR 464



 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 3/191 (1%)
 Frame = -2

Query: 631 MVSGYSKSGDMDMARMMFDKMPVKNLVPWTIMISGYAEKGFAKQAFTLYDQMERSGLKPD 452
           ++S +S    M +A   F+++   N+  +  MI  ++      QAF  +  M+R G   D
Sbjct: 58  LISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYAD 117

Query: 451 NGTFXXXXXXXXXXXXXXXXXXIHTSVGRSRFRHSTQVCNALVDMYAKCGS--LDRAMKV 278
           N TF                  +H  + +  F     V N+L+D Y+KCGS  +  A K+
Sbjct: 118 NFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKL 177

Query: 277 FDGM-VERDVVSWNSILQGLAMHGHGERALELFSRMSREGFTPDGVTFIGVLCACTHGGL 101
           F  M   RDVVSWNS++ GLA  G  E A ++F  M  +    DG+++  +L      G 
Sbjct: 178 FVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPEK----DGISWNTMLDGYVKVGK 233

Query: 100 VDDGRRYFSIM 68
           +DD  + F  M
Sbjct: 234 MDDAFKLFDEM 244