BLASTX nr result

ID: Coptis24_contig00025037 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025037
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20163.3| unnamed protein product [Vitis vinifera]              100   2e-19
ref|XP_002283414.1| PREDICTED: probable disease resistance prote...   100   2e-19
ref|XP_002283439.2| PREDICTED: probable disease resistance prote...    97   1e-18
ref|XP_002329155.1| BED finger-nbs-lrr resistance protein [Popul...    92   6e-17
ref|XP_002317519.1| nbs-lrr resistance protein [Populus trichoca...    91   1e-16

>emb|CBI20163.3| unnamed protein product [Vitis vinifera]
          Length = 984

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 10/133 (7%)
 Frame = -3

Query: 369  HCPNLEEITVQQCSQMEELLTSGEDSGEGSTNTTTDTISVPRLKILWLESLPKLESIWKG 190
            H  NL+ I V+ CSQME+++   E+      N     +  P  + L L  LPKL+ IWKG
Sbjct: 789  HLQNLQNIYVRSCSQMEDIIVGVEEEDINEKNNPI--LCFPNFRCLELVDLPKLKGIWKG 846

Query: 189  VMACDCLQEVVVDECVQLKKLPQFSV---------KHKFSPLTLKEIRASKEWWDALEWD 37
             M CD LQ ++V +C  LK+LP F+V         + + S   LK+I   KEWWD +EWD
Sbjct: 847  TMTCDSLQHLLVLKCRNLKRLP-FAVSVHINDGNGQRRASTPPLKQIGGDKEWWDGVEWD 905

Query: 36   -HPSEKNILQPFF 1
             HP  K++ QP F
Sbjct: 906  THPHAKSVFQPLF 918


>ref|XP_002283414.1| PREDICTED: probable disease resistance protein At4g27220-like [Vitis
            vinifera]
          Length = 1016

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 10/133 (7%)
 Frame = -3

Query: 369  HCPNLEEITVQQCSQMEELLTSGEDSGEGSTNTTTDTISVPRLKILWLESLPKLESIWKG 190
            H  NL+ I V+ CSQME+++   E+      N     +  P  + L L  LPKL+ IWKG
Sbjct: 858  HLQNLQNIYVRSCSQMEDIIVGVEEEDINEKNNPI--LCFPNFRCLELVDLPKLKGIWKG 915

Query: 189  VMACDCLQEVVVDECVQLKKLPQFSV---------KHKFSPLTLKEIRASKEWWDALEWD 37
             M CD LQ ++V +C  LK+LP F+V         + + S   LK+I   KEWWD +EWD
Sbjct: 916  TMTCDSLQHLLVLKCRNLKRLP-FAVSVHINDGNGQRRASTPPLKQIGGDKEWWDGVEWD 974

Query: 36   -HPSEKNILQPFF 1
             HP  K++ QP F
Sbjct: 975  THPHAKSVFQPLF 987


>ref|XP_002283439.2| PREDICTED: probable disease resistance protein At4g27220-like [Vitis
            vinifera]
          Length = 1276

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 12/134 (8%)
 Frame = -3

Query: 369  HCPNLEEITVQQCSQMEELLTSGE-----DSGEGSTNTTTDTISV-PRLKILWLESLPKL 208
            H  NL+ I V  C QME+L+ + E     +  E   N   + I   P L+ L LE+LPKL
Sbjct: 1114 HLKNLQSIDVGNCRQMEDLIVAAEVEEEEEEEEEVINQRHNLILYFPNLQSLTLENLPKL 1173

Query: 207  ESIWKGVMACDCLQEVVVDECVQLKKLP------QFSVKHKFSPLTLKEIRASKEWWDAL 46
            +SIWKG M CD LQ + V  C +L++LP        S + + S   LK+IR  KEWWD L
Sbjct: 1174 KSIWKGTMTCDSLQ-LTVWNCPELRRLPLSVQINDGSGERRASTPPLKQIRGEKEWWDGL 1232

Query: 45   EWDHPSEKNILQPF 4
            EW+ P  K+I +PF
Sbjct: 1233 EWNTPHAKSIFEPF 1246


>ref|XP_002329155.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa]
            gi|222869824|gb|EEF06955.1| BED finger-nbs-lrr resistance
            protein [Populus trichocarpa]
          Length = 1075

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 7/125 (5%)
 Frame = -3

Query: 360  NLEEITVQQCSQMEELLTSGEDSGEG------STNTTTDTISVPRLKILWLESLPKLESI 199
            NLE I V  C QMEE++   ED  EG      S+++     S+P LK+L L +LP+L+SI
Sbjct: 943  NLEVIEVDDCDQMEEIIAI-EDEEEGMMVEDSSSSSHYAVTSLPNLKVLKLSNLPELKSI 1001

Query: 198  WKGVMACDCLQEVVVDECVQLKKLPQFSVKHKFSPLTLKEIRA-SKEWWDALEWDHPSEK 22
            + G + CD LQE++V  C  LK++      H      L++I+A  KEWW+++EW + + K
Sbjct: 1002 FHGEVICDSLQEIIVVNCPNLKRISLSHRNHANGQTPLRKIQAYPKEWWESVEWGNSNSK 1061

Query: 21   NILQP 7
            N L+P
Sbjct: 1062 NALEP 1066


>ref|XP_002317519.1| nbs-lrr resistance protein [Populus trichocarpa]
            gi|222860584|gb|EEE98131.1| nbs-lrr resistance protein
            [Populus trichocarpa]
          Length = 958

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 49/127 (38%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
 Frame = -3

Query: 360  NLEEITVQQCSQMEELL--------TSGEDSGEGSTNTTTDTISVPRLKILWLESLPKLE 205
            NLE I V  C +MEE++        T  +DS   S   T   +S  +L+ L L +LP+L+
Sbjct: 824  NLEVIEVDDCHKMEEIIAIEEEEEGTMVKDSNRSSNRNTVTNLS--KLRALKLSNLPELK 881

Query: 204  SIWKGVMACDCLQEVVVDECVQLKKLPQFSVKHKFSPLTLKEIRA-SKEWWDALEWDHPS 28
            SI++GV+ C  LQE++V  C +LK++P F        + L+ I+A  KEWW+ +EW + +
Sbjct: 882  SIFQGVVICGSLQEILVVNCPELKRIPLFDPVLGIGQIPLRRIQAYPKEWWERVEWGNSN 941

Query: 27   EKNILQP 7
             KN+LQP
Sbjct: 942  SKNVLQP 948


Top