BLASTX nr result
ID: Coptis24_contig00025035
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00025035 (276 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containi... 124 6e-27 emb|CBI31710.3| unnamed protein product [Vitis vinifera] 124 6e-27 emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera] 123 1e-26 ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containi... 120 1e-25 ref|XP_002311156.1| predicted protein [Populus trichocarpa] gi|2... 120 1e-25 >ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Vitis vinifera] Length = 1005 Score = 124 bits (312), Expect = 6e-27 Identities = 58/92 (63%), Positives = 77/92 (83%) Frame = -1 Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97 DMYAKCG+++ SE++F+ M +DTVSWN+ML+GYA+HG GD A+ALFS M ES ++DSV Sbjct: 676 DMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735 Query: 96 SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1 SFVSVLSACRH GL+EEGR +F SMS ++ ++ Sbjct: 736 SFVSVLSACRHAGLVEEGRKIFHSMSDKYHIK 767 Score = 56.6 bits (135), Expect = 2e-06 Identities = 29/81 (35%), Positives = 47/81 (58%) Frame = -1 Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97 D+Y+KCG V+++ VF +M +D VSW +M+AGYA +G + LF +M ++ V Sbjct: 271 DLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV 330 Query: 96 SFVSVLSACRHGGLIEEGRNL 34 S VS A +E+G+ + Sbjct: 331 SAVSAFLAAAETIDLEKGKEI 351 >emb|CBI31710.3| unnamed protein product [Vitis vinifera] Length = 649 Score = 124 bits (312), Expect = 6e-27 Identities = 58/92 (63%), Positives = 77/92 (83%) Frame = -1 Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97 DMYAKCG+++ SE++F+ M +DTVSWN+ML+GYA+HG GD A+ALFS M ES ++DSV Sbjct: 320 DMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 379 Query: 96 SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1 SFVSVLSACRH GL+EEGR +F SMS ++ ++ Sbjct: 380 SFVSVLSACRHAGLVEEGRKIFHSMSDKYHIK 411 >emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera] Length = 1005 Score = 123 bits (309), Expect = 1e-26 Identities = 58/92 (63%), Positives = 76/92 (82%) Frame = -1 Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97 DMYAKCG++ SE++F+ M +DTVSWN+ML+GYA+HG GD A+ALFS M ES ++DSV Sbjct: 676 DMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735 Query: 96 SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1 SFVSVLSACRH GL+EEGR +F SMS ++ ++ Sbjct: 736 SFVSVLSACRHXGLVEEGRKIFHSMSDKYHIK 767 Score = 56.6 bits (135), Expect = 2e-06 Identities = 29/81 (35%), Positives = 47/81 (58%) Frame = -1 Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97 D+Y+KCG V+++ VF +M +D VSW +M+AGYA +G + LF +M ++ V Sbjct: 271 DLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV 330 Query: 96 SFVSVLSACRHGGLIEEGRNL 34 S VS A +E+G+ + Sbjct: 331 SAVSAFLAAAETIDLEKGKEI 351 >ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Glycine max] Length = 887 Score = 120 bits (301), Expect = 1e-25 Identities = 56/92 (60%), Positives = 74/92 (80%) Frame = -1 Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97 DMYAK G+++ SE+ FH M + T+SWN+ML+GYA+HG G+ A+ALFS M E+ VDSV Sbjct: 675 DMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSV 734 Query: 96 SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1 S++SVLSACRH GLI+EGRN+F SM+ +H LE Sbjct: 735 SYISVLSACRHAGLIQEGRNIFQSMTEKHNLE 766 Score = 58.9 bits (141), Expect = 4e-07 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Frame = -1 Query: 276 DMYAKCGRVNLSEEVFH-RMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDS 100 DMYAKCG + +E +FH ++D VSWN M+AGY +G + A++ F++M + Sbjct: 573 DMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNL 632 Query: 99 VSFVSVLSACRHGGLIEE 46 V+FV++L A + ++ E Sbjct: 633 VTFVTILPAVSYLSILRE 650 Score = 58.5 bits (140), Expect = 5e-07 Identities = 26/81 (32%), Positives = 47/81 (58%) Frame = -1 Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97 DMY+KCG V L+ ++F +M ++D +SW +M+AGY HG + L M +++ + Sbjct: 270 DMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKI 329 Query: 96 SFVSVLSACRHGGLIEEGRNL 34 S V+ + A +E+G+ + Sbjct: 330 SVVNSVLAATETRDLEKGKEV 350 >ref|XP_002311156.1| predicted protein [Populus trichocarpa] gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa] Length = 535 Score = 120 bits (300), Expect = 1e-25 Identities = 58/92 (63%), Positives = 71/92 (77%) Frame = -1 Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97 DMYAKCG ++ SE++FH M +DTVSWN MLAGYA+HG G A+ LFSRM +S +DS Sbjct: 335 DMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSF 394 Query: 96 SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1 SF++VLSACRH GLI EGR +F SMS +H LE Sbjct: 395 SFINVLSACRHAGLIGEGRKIFDSMSKQHQLE 426 Score = 57.4 bits (137), Expect = 1e-06 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Frame = -1 Query: 276 DMYAKCGRVNLSEEVFHRM-CIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDS 100 DMYAKCG ++ +E +FHR C +D VSWN M+AGY G A + F +M + + Sbjct: 233 DMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNI 292 Query: 99 VSFVSVLSACRHGGLIEEGRNL 34 V+ V+VL A H + G L Sbjct: 293 VTIVTVLPAVAHLSALRAGMTL 314