BLASTX nr result

ID: Coptis24_contig00025035 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025035
         (276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containi...   124   6e-27
emb|CBI31710.3| unnamed protein product [Vitis vinifera]              124   6e-27
emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]   123   1e-26
ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containi...   120   1e-25
ref|XP_002311156.1| predicted protein [Populus trichocarpa] gi|2...   120   1e-25

>ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  124 bits (312), Expect = 6e-27
 Identities = 58/92 (63%), Positives = 77/92 (83%)
 Frame = -1

Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
           DMYAKCG+++ SE++F+ M  +DTVSWN+ML+GYA+HG GD A+ALFS M ES  ++DSV
Sbjct: 676 DMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735

Query: 96  SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1
           SFVSVLSACRH GL+EEGR +F SMS ++ ++
Sbjct: 736 SFVSVLSACRHAGLVEEGRKIFHSMSDKYHIK 767



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/81 (35%), Positives = 47/81 (58%)
 Frame = -1

Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
           D+Y+KCG V+++  VF +M  +D VSW +M+AGYA +G     + LF +M      ++ V
Sbjct: 271 DLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV 330

Query: 96  SFVSVLSACRHGGLIEEGRNL 34
           S VS   A      +E+G+ +
Sbjct: 331 SAVSAFLAAAETIDLEKGKEI 351


>emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  124 bits (312), Expect = 6e-27
 Identities = 58/92 (63%), Positives = 77/92 (83%)
 Frame = -1

Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
           DMYAKCG+++ SE++F+ M  +DTVSWN+ML+GYA+HG GD A+ALFS M ES  ++DSV
Sbjct: 320 DMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 379

Query: 96  SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1
           SFVSVLSACRH GL+EEGR +F SMS ++ ++
Sbjct: 380 SFVSVLSACRHAGLVEEGRKIFHSMSDKYHIK 411


>emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  123 bits (309), Expect = 1e-26
 Identities = 58/92 (63%), Positives = 76/92 (82%)
 Frame = -1

Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
           DMYAKCG++  SE++F+ M  +DTVSWN+ML+GYA+HG GD A+ALFS M ES  ++DSV
Sbjct: 676 DMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735

Query: 96  SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1
           SFVSVLSACRH GL+EEGR +F SMS ++ ++
Sbjct: 736 SFVSVLSACRHXGLVEEGRKIFHSMSDKYHIK 767



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/81 (35%), Positives = 47/81 (58%)
 Frame = -1

Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
           D+Y+KCG V+++  VF +M  +D VSW +M+AGYA +G     + LF +M      ++ V
Sbjct: 271 DLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV 330

Query: 96  SFVSVLSACRHGGLIEEGRNL 34
           S VS   A      +E+G+ +
Sbjct: 331 SAVSAFLAAAETIDLEKGKEI 351


>ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  120 bits (301), Expect = 1e-25
 Identities = 56/92 (60%), Positives = 74/92 (80%)
 Frame = -1

Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
           DMYAK G+++ SE+ FH M  + T+SWN+ML+GYA+HG G+ A+ALFS M E+   VDSV
Sbjct: 675 DMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSV 734

Query: 96  SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1
           S++SVLSACRH GLI+EGRN+F SM+ +H LE
Sbjct: 735 SYISVLSACRHAGLIQEGRNIFQSMTEKHNLE 766



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = -1

Query: 276 DMYAKCGRVNLSEEVFH-RMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDS 100
           DMYAKCG +  +E +FH    ++D VSWN M+AGY  +G  + A++ F++M       + 
Sbjct: 573 DMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNL 632

Query: 99  VSFVSVLSACRHGGLIEE 46
           V+FV++L A  +  ++ E
Sbjct: 633 VTFVTILPAVSYLSILRE 650



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 26/81 (32%), Positives = 47/81 (58%)
 Frame = -1

Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
           DMY+KCG V L+ ++F +M ++D +SW +M+AGY  HG     + L   M     +++ +
Sbjct: 270 DMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKI 329

Query: 96  SFVSVLSACRHGGLIEEGRNL 34
           S V+ + A      +E+G+ +
Sbjct: 330 SVVNSVLAATETRDLEKGKEV 350


>ref|XP_002311156.1| predicted protein [Populus trichocarpa] gi|222850976|gb|EEE88523.1|
           predicted protein [Populus trichocarpa]
          Length = 535

 Score =  120 bits (300), Expect = 1e-25
 Identities = 58/92 (63%), Positives = 71/92 (77%)
 Frame = -1

Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
           DMYAKCG ++ SE++FH M  +DTVSWN MLAGYA+HG G  A+ LFSRM +S   +DS 
Sbjct: 335 DMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSF 394

Query: 96  SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1
           SF++VLSACRH GLI EGR +F SMS +H LE
Sbjct: 395 SFINVLSACRHAGLIGEGRKIFDSMSKQHQLE 426



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
 Frame = -1

Query: 276 DMYAKCGRVNLSEEVFHRM-CIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDS 100
           DMYAKCG ++ +E +FHR  C +D VSWN M+AGY   G    A + F +M     + + 
Sbjct: 233 DMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNI 292

Query: 99  VSFVSVLSACRHGGLIEEGRNL 34
           V+ V+VL A  H   +  G  L
Sbjct: 293 VTIVTVLPAVAHLSALRAGMTL 314


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