BLASTX nr result
ID: Coptis24_contig00025035
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00025035
(276 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containi... 124 6e-27
emb|CBI31710.3| unnamed protein product [Vitis vinifera] 124 6e-27
emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera] 123 1e-26
ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containi... 120 1e-25
ref|XP_002311156.1| predicted protein [Populus trichocarpa] gi|2... 120 1e-25
>ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 124 bits (312), Expect = 6e-27
Identities = 58/92 (63%), Positives = 77/92 (83%)
Frame = -1
Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
DMYAKCG+++ SE++F+ M +DTVSWN+ML+GYA+HG GD A+ALFS M ES ++DSV
Sbjct: 676 DMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735
Query: 96 SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1
SFVSVLSACRH GL+EEGR +F SMS ++ ++
Sbjct: 736 SFVSVLSACRHAGLVEEGRKIFHSMSDKYHIK 767
Score = 56.6 bits (135), Expect = 2e-06
Identities = 29/81 (35%), Positives = 47/81 (58%)
Frame = -1
Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
D+Y+KCG V+++ VF +M +D VSW +M+AGYA +G + LF +M ++ V
Sbjct: 271 DLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV 330
Query: 96 SFVSVLSACRHGGLIEEGRNL 34
S VS A +E+G+ +
Sbjct: 331 SAVSAFLAAAETIDLEKGKEI 351
>emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 124 bits (312), Expect = 6e-27
Identities = 58/92 (63%), Positives = 77/92 (83%)
Frame = -1
Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
DMYAKCG+++ SE++F+ M +DTVSWN+ML+GYA+HG GD A+ALFS M ES ++DSV
Sbjct: 320 DMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 379
Query: 96 SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1
SFVSVLSACRH GL+EEGR +F SMS ++ ++
Sbjct: 380 SFVSVLSACRHAGLVEEGRKIFHSMSDKYHIK 411
>emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 123 bits (309), Expect = 1e-26
Identities = 58/92 (63%), Positives = 76/92 (82%)
Frame = -1
Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
DMYAKCG++ SE++F+ M +DTVSWN+ML+GYA+HG GD A+ALFS M ES ++DSV
Sbjct: 676 DMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735
Query: 96 SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1
SFVSVLSACRH GL+EEGR +F SMS ++ ++
Sbjct: 736 SFVSVLSACRHXGLVEEGRKIFHSMSDKYHIK 767
Score = 56.6 bits (135), Expect = 2e-06
Identities = 29/81 (35%), Positives = 47/81 (58%)
Frame = -1
Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
D+Y+KCG V+++ VF +M +D VSW +M+AGYA +G + LF +M ++ V
Sbjct: 271 DLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV 330
Query: 96 SFVSVLSACRHGGLIEEGRNL 34
S VS A +E+G+ +
Sbjct: 331 SAVSAFLAAAETIDLEKGKEI 351
>ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 120 bits (301), Expect = 1e-25
Identities = 56/92 (60%), Positives = 74/92 (80%)
Frame = -1
Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
DMYAK G+++ SE+ FH M + T+SWN+ML+GYA+HG G+ A+ALFS M E+ VDSV
Sbjct: 675 DMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSV 734
Query: 96 SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1
S++SVLSACRH GLI+EGRN+F SM+ +H LE
Sbjct: 735 SYISVLSACRHAGLIQEGRNIFQSMTEKHNLE 766
Score = 58.9 bits (141), Expect = 4e-07
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = -1
Query: 276 DMYAKCGRVNLSEEVFH-RMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDS 100
DMYAKCG + +E +FH ++D VSWN M+AGY +G + A++ F++M +
Sbjct: 573 DMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNL 632
Query: 99 VSFVSVLSACRHGGLIEE 46
V+FV++L A + ++ E
Sbjct: 633 VTFVTILPAVSYLSILRE 650
Score = 58.5 bits (140), Expect = 5e-07
Identities = 26/81 (32%), Positives = 47/81 (58%)
Frame = -1
Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
DMY+KCG V L+ ++F +M ++D +SW +M+AGY HG + L M +++ +
Sbjct: 270 DMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKI 329
Query: 96 SFVSVLSACRHGGLIEEGRNL 34
S V+ + A +E+G+ +
Sbjct: 330 SVVNSVLAATETRDLEKGKEV 350
>ref|XP_002311156.1| predicted protein [Populus trichocarpa] gi|222850976|gb|EEE88523.1|
predicted protein [Populus trichocarpa]
Length = 535
Score = 120 bits (300), Expect = 1e-25
Identities = 58/92 (63%), Positives = 71/92 (77%)
Frame = -1
Query: 276 DMYAKCGRVNLSEEVFHRMCIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDSV 97
DMYAKCG ++ SE++FH M +DTVSWN MLAGYA+HG G A+ LFSRM +S +DS
Sbjct: 335 DMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSF 394
Query: 96 SFVSVLSACRHGGLIEEGRNLFSSMSSRHGLE 1
SF++VLSACRH GLI EGR +F SMS +H LE
Sbjct: 395 SFINVLSACRHAGLIGEGRKIFDSMSKQHQLE 426
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = -1
Query: 276 DMYAKCGRVNLSEEVFHRM-CIRDTVSWNSMLAGYALHGLGDPAVALFSRMLESCNEVDS 100
DMYAKCG ++ +E +FHR C +D VSWN M+AGY G A + F +M + +
Sbjct: 233 DMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNI 292
Query: 99 VSFVSVLSACRHGGLIEEGRNL 34
V+ V+VL A H + G L
Sbjct: 293 VTIVTVLPAVAHLSALRAGMTL 314