BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025001
         (206 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK48829.1| unknown [Lotus japonicus]                              108   2e-23
ref|XP_003605589.1| Cytochrome b559 subunit alpha [Medicago trun...   110   1e-22
ref|XP_003606015.1| Cytochrome b559 subunit alpha [Medicago trun...    91   1e-16
ref|XP_002888378.1| hypothetical protein ARALYDRAFT_894035 [Arab...    61   3e-13
ref|XP_003596335.1| Cytochrome b559 subunit beta [Medicago trunc...    61   5e-13

>gb|AFK48829.1| unknown [Lotus japonicus]
          Length = 72

 Score =  108 bits (271), Expect(2) = 2e-23
 Identities = 50/51 (98%), Positives = 50/51 (98%)
 Frame = +3

Query: 54  FFWGQYQQCSSSNDKPNPNYRAMTQSNPNEQSVELNRTSLYWGLLLIFVLA 206
           FFW QYQQCSSSNDKPNPNYRAMTQSNPNEQSVELNRTSLYWGLLLIFVLA
Sbjct: 13  FFWDQYQQCSSSNDKPNPNYRAMTQSNPNEQSVELNRTSLYWGLLLIFVLA 63



 Score = 25.4 bits (54), Expect(2) = 2e-23
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 16 MVGCSRTGCTYRFFF 60
          MV CSRT  T+RFF+
Sbjct: 1  MVSCSRTSGTHRFFW 15


>ref|XP_003605589.1| Cytochrome b559 subunit alpha [Medicago truncatula]
           gi|355506644|gb|AES87786.1| Cytochrome b559 subunit
           alpha [Medicago truncatula]
          Length = 153

 Score =  110 bits (275), Expect = 1e-22
 Identities = 53/63 (84%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
 Frame = +3

Query: 21  WLFTDWLYLP-FFFWGQYQQCSSSNDKPNPNYRAMTQSNPNEQSVELNRTSLYWGLLLIF 197
           WL    L +P  FFW QYQQCSSSNDKPNPNYRAMTQSNPNEQ+VELNRTSLYWGLLLIF
Sbjct: 82  WLAVHGLAVPTVFFWDQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIF 141

Query: 198 VLA 206
           VLA
Sbjct: 142 VLA 144


>ref|XP_003606015.1| Cytochrome b559 subunit alpha [Medicago truncatula]
           gi|355507070|gb|AES88212.1| Cytochrome b559 subunit
           alpha [Medicago truncatula]
          Length = 136

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 42/47 (89%), Positives = 45/47 (95%)
 Frame = +3

Query: 66  QYQQCSSSNDKPNPNYRAMTQSNPNEQSVELNRTSLYWGLLLIFVLA 206
           ++ QCSSSNDKPNPNYRA TQSNPNEQ+VELNRTSLYWGLLLIFVLA
Sbjct: 81  RWLQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLA 127


>ref|XP_002888378.1| hypothetical protein ARALYDRAFT_894035 [Arabidopsis lyrata subsp.
           lyrata] gi|297334219|gb|EFH64637.1| hypothetical protein
           ARALYDRAFT_894035 [Arabidopsis lyrata subsp. lyrata]
          Length = 136

 Score = 61.2 bits (147), Expect(2) = 3e-13
 Identities = 29/30 (96%), Positives = 29/30 (96%)
 Frame = +3

Query: 117 AMTQSNPNEQSVELNRTSLYWGLLLIFVLA 206
           AMTQSNPNEQSVELNRTSLYWGLL IFVLA
Sbjct: 98  AMTQSNPNEQSVELNRTSLYWGLLFIFVLA 127



 Score = 38.5 bits (88), Expect(2) = 3e-13
 Identities = 16/21 (76%), Positives = 20/21 (95%)
 Frame = +2

Query: 11  VRWLAVHGLAVPTVFFLGSIS 73
           +RWLAVHGLAVPTV FLG+++
Sbjct: 80  MRWLAVHGLAVPTVSFLGAMT 100


>ref|XP_003596335.1| Cytochrome b559 subunit beta [Medicago truncatula]
           gi|87241087|gb|ABD32945.1| Photosystem II protein
           cytochrome b559 [Medicago truncatula]
           gi|355485383|gb|AES66586.1| Cytochrome b559 subunit beta
           [Medicago truncatula]
          Length = 60

 Score = 60.8 bits (146), Expect(2) = 5e-13
 Identities = 28/35 (80%), Positives = 32/35 (91%)
 Frame = +1

Query: 52  FFFGVNISNAVHPTINLIRIIEL*HNQTRTNKVLN 156
           FFF +NI+NAVHPTINLIRIIEL HNQT+ NK+LN
Sbjct: 26  FFFEININNAVHPTINLIRIIELRHNQTQMNKMLN 60



 Score = 38.1 bits (87), Expect(2) = 5e-13
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +2

Query: 2  IFTVRWLAVHGLAVPTVFF 58
          IFTVRWLAVH LAVP VFF
Sbjct: 9  IFTVRWLAVHRLAVPIVFF 27