BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024996
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containi...    72   5e-11
ref|XP_002524769.1| pentatricopeptide repeat-containing protein,...    60   2e-07

>ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780
           [Vitis vinifera] gi|296086664|emb|CBI32299.3| unnamed
           protein product [Vitis vinifera]
          Length = 494

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 36/69 (52%), Positives = 48/69 (69%)
 Frame = -2

Query: 217 LSNEVAQLCDELVSNQFDSKKVFGILEDKVVSLIRIYSNGAAFVSLLEKLKPWPLLFIKV 38
           L  +V+QL DELV +  DS  V  +LE+K  SL R YSNG+AFV LL++L  WP L ++V
Sbjct: 62  LRGKVSQLRDELVPSGDDSDMVVRVLEEKGESLFRSYSNGSAFVELLKQLSSWPYLALQV 121

Query: 37  FNWRREKCE 11
           FNWRR + +
Sbjct: 122 FNWRRNQTD 130


>ref|XP_002524769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535953|gb|EEF37612.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 509

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
 Frame = -2

Query: 358 KLISLFTEKEIDAYRKLISLFTEK-ETNGRIIHKTNRQRFIHKTEDVFLSNEVAQLCDEL 182
           KL    T + +  +  +ISLF+ +   + + I            ED  LS  V+ L DEL
Sbjct: 43  KLARAHTSEPVSFFPNIISLFSRRFPVDNKAI------------ED--LSKTVSHLRDEL 88

Query: 181 VSNQFDSKKVFGILEDKVVSLIRIYSNGAAFVSLLEKLKPWPLLFIKVFNWRREKCE 11
           V +  DS K F +LE++  SL R+ S+ +A V LL +L   P L ++VFNWRR++ E
Sbjct: 89  VQHAEDSDKFFRVLEEQGDSLFRMRSDRSALVELLRQLVSLPHLAVEVFNWRRKQTE 145