BLASTX nr result

ID: Coptis24_contig00024985 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024985
         (472 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002315903.1| predicted protein [Populus trichocarpa] gi|2...   227   7e-58
ref|XP_002532228.1| TRANSPARENT TESTA 12 protein, putative [Rici...   226   1e-57
ref|XP_003592586.1| Protein TRANSPARENT TESTA [Medicago truncatu...   225   3e-57
emb|CBI26940.3| unnamed protein product [Vitis vinifera]              222   2e-56
ref|XP_002280229.1| PREDICTED: MATE efflux family protein 5 [Vit...   222   2e-56

>ref|XP_002315903.1| predicted protein [Populus trichocarpa] gi|222864943|gb|EEF02074.1|
           predicted protein [Populus trichocarpa]
          Length = 481

 Score =  227 bits (579), Expect = 7e-58
 Identities = 111/156 (71%), Positives = 128/156 (82%)
 Frame = -1

Query: 472 LLSGLLPNPKLETSVLSISLNSCWMVYNISVGLGGAVSTRVSNELGAGKPRNARFAIHAM 293
           LLSGLLPNPKLE SVLSISLN+CWMVY ISVGLGG +STRVSNELGAG+P+ AR AI  M
Sbjct: 289 LLSGLLPNPKLEASVLSISLNTCWMVYMISVGLGGTISTRVSNELGAGRPQGARLAICVM 348

Query: 292 VVLSXXXXXXXXXXXILVRKLWGKLYSNEEEVIRYVATMLPLLALSNFMDGLQCVLSGAA 113
           ++++           ILVR++WG LYSNEEEVI YVA M+PLLALS+F+DG QCVLSGAA
Sbjct: 349 IIIALSEGAAVGITTILVRQVWGNLYSNEEEVITYVANMMPLLALSDFLDGFQCVLSGAA 408

Query: 112 RGCGWQNICSLINLVAYYGVGIPSAILFAFLFKIGG 5
           RGCGWQN+C+ INL AYY V IPSA+L AF+F IGG
Sbjct: 409 RGCGWQNLCAFINLGAYYVVAIPSAVLLAFIFHIGG 444


>ref|XP_002532228.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
           gi|223528085|gb|EEF30159.1| TRANSPARENT TESTA 12
           protein, putative [Ricinus communis]
          Length = 485

 Score =  226 bits (576), Expect = 1e-57
 Identities = 109/156 (69%), Positives = 130/156 (83%)
 Frame = -1

Query: 472 LLSGLLPNPKLETSVLSISLNSCWMVYNISVGLGGAVSTRVSNELGAGKPRNARFAIHAM 293
           LLSGLLPNPKLETSVLSISLN+CWMVY ISVGLGGA+STRVSNELGAG+P  A+ A+  M
Sbjct: 285 LLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGRPEGAQLALCVM 344

Query: 292 VVLSXXXXXXXXXXXILVRKLWGKLYSNEEEVIRYVATMLPLLALSNFMDGLQCVLSGAA 113
           ++++           +L+R++WGKLYSNEEEVI+YVA +LPLLALS+F+DG QCVLSGAA
Sbjct: 345 IIMALSEGLVVGIVTVLLRQVWGKLYSNEEEVIKYVANILPLLALSDFLDGFQCVLSGAA 404

Query: 112 RGCGWQNICSLINLVAYYGVGIPSAILFAFLFKIGG 5
           RGCGWQ +C+ INL AYY V IP A+LFAF+F IGG
Sbjct: 405 RGCGWQTLCACINLGAYYVVAIPCALLFAFVFHIGG 440


>ref|XP_003592586.1| Protein TRANSPARENT TESTA [Medicago truncatula]
           gi|355481634|gb|AES62837.1| Protein TRANSPARENT TESTA
           [Medicago truncatula]
          Length = 484

 Score =  225 bits (574), Expect = 3e-57
 Identities = 111/156 (71%), Positives = 128/156 (82%)
 Frame = -1

Query: 472 LLSGLLPNPKLETSVLSISLNSCWMVYNISVGLGGAVSTRVSNELGAGKPRNARFAIHAM 293
           LLSGLLPNP+LETSVLSISLN+CWMVY ISVGLGGA+STRVSNELG G  + A  A+  M
Sbjct: 283 LLSGLLPNPQLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGCGNAKGALLALRVM 342

Query: 292 VVLSXXXXXXXXXXXILVRKLWGKLYSNEEEVIRYVATMLPLLALSNFMDGLQCVLSGAA 113
           +V++           ILV+ +WGKLYSNE+EVI+YVA M+PLLALS+F+DG QCVLSGAA
Sbjct: 343 IVIAIVEGTTVVLVTILVKNVWGKLYSNEDEVIKYVAKMMPLLALSDFLDGFQCVLSGAA 402

Query: 112 RGCGWQNICSLINLVAYYGVGIPSAILFAFLFKIGG 5
           RGCGWQN+C+ INL AYY VGIPSAILFAF F IGG
Sbjct: 403 RGCGWQNLCASINLGAYYVVGIPSAILFAFTFHIGG 438


>emb|CBI26940.3| unnamed protein product [Vitis vinifera]
          Length = 454

 Score =  222 bits (566), Expect = 2e-56
 Identities = 110/156 (70%), Positives = 127/156 (81%)
 Frame = -1

Query: 472 LLSGLLPNPKLETSVLSISLNSCWMVYNISVGLGGAVSTRVSNELGAGKPRNARFAIHAM 293
           LLSGLLPNPKLE SVLSISLN+CWMVY ISVGLGGA+STRVSNELGA  P++AR A+  +
Sbjct: 233 LLSGLLPNPKLEASVLSISLNTCWMVYTISVGLGGAISTRVSNELGAKHPQHARLAVWVV 292

Query: 292 VVLSXXXXXXXXXXXILVRKLWGKLYSNEEEVIRYVATMLPLLALSNFMDGLQCVLSGAA 113
           +++S           ILVR +WGKLYSNE EVIRYVA M+PLLALSNF+DG QCVLSGAA
Sbjct: 293 IIISISEGVVVGTATILVRHVWGKLYSNEAEVIRYVAKMMPLLALSNFLDGFQCVLSGAA 352

Query: 112 RGCGWQNICSLINLVAYYGVGIPSAILFAFLFKIGG 5
           RG GWQNIC++INL AYY VGIP ++LFAF+   GG
Sbjct: 353 RGYGWQNICTIINLGAYYIVGIPCSVLFAFICNFGG 388


>ref|XP_002280229.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera]
          Length = 511

 Score =  222 bits (566), Expect = 2e-56
 Identities = 110/156 (70%), Positives = 127/156 (81%)
 Frame = -1

Query: 472 LLSGLLPNPKLETSVLSISLNSCWMVYNISVGLGGAVSTRVSNELGAGKPRNARFAIHAM 293
           LLSGLLPNPKLE SVLSISLN+CWMVY ISVGLGGA+STRVSNELGA  P++AR A+  +
Sbjct: 290 LLSGLLPNPKLEASVLSISLNTCWMVYTISVGLGGAISTRVSNELGAKHPQHARLAVWVV 349

Query: 292 VVLSXXXXXXXXXXXILVRKLWGKLYSNEEEVIRYVATMLPLLALSNFMDGLQCVLSGAA 113
           +++S           ILVR +WGKLYSNE EVIRYVA M+PLLALSNF+DG QCVLSGAA
Sbjct: 350 IIISISEGVVVGTATILVRHVWGKLYSNEAEVIRYVAKMMPLLALSNFLDGFQCVLSGAA 409

Query: 112 RGCGWQNICSLINLVAYYGVGIPSAILFAFLFKIGG 5
           RG GWQNIC++INL AYY VGIP ++LFAF+   GG
Sbjct: 410 RGYGWQNICTIINLGAYYIVGIPCSVLFAFICNFGG 445


Top