BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024940
         (518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD78322.1| polyprotein [Primula vulgaris]                          58   7e-07
ref|XP_002269588.2| PREDICTED: uncharacterized protein LOC100257...    55   5e-06
gb|ABA97314.2| retrotransposon protein, putative, unclassified [...    55   5e-06
emb|CAN76938.1| hypothetical protein VITISV_025425 [Vitis vinifera]    55   6e-06

>gb|ABD78322.1| polyprotein [Primula vulgaris]
          Length = 1359

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
 Frame = -2

Query: 334 RTLRIDFPKFDGKDLERCGCFKLNNIKILIKF-QLRMVP*ASLYLQGDVVSWYRRIKQSL 158
           RT+R+DFPKF G+++     +K N    L +  + + +  A+L+ +G  + WY+ +++S 
Sbjct: 18  RTIRLDFPKFYGENVVEW-VYKANQFFSLYQTPETQRIKIANLHFEGQPLVWYQNLEKSD 76

Query: 157 GILIWHQLSLELCFRFGSRKNIDLCSSLAKLSQTGIVREFIAEFERLVNMV 5
            I  W  L  ++  RFG   N +    L KL Q   V+E+ ++FE + N V
Sbjct: 77  LISSWDNLCDQMTKRFGENLNENPLDQLIKLKQRNSVKEYKSDFEIISNRV 127


>ref|XP_002269588.2| PREDICTED: uncharacterized protein LOC100257206 [Vitis vinifera]
          Length = 787

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
 Frame = -2

Query: 346 VIQGRTLRIDFPKFDGKDLERCGCFKLNNIKILIKFQL----RMVP*ASLYLQGDVVSWY 179
           ++  ++ +++FP+F G D         N ++    +Q     + VP A+ +L+G+   W+
Sbjct: 46  IVSSKSAKLEFPRFSGDDPTEW----FNRVEQFFDYQSTAENQKVPMAAYHLEGEANQWW 101

Query: 178 ----RRIKQSLGILIWHQLSLELCFRFGSRKNIDLCSSLAKLSQTGIVREFIAEFERLVN 11
               R +K+   ++ W +   EL  RFG     D   +L+++ Q G +R++  EFE+L N
Sbjct: 102 QWLHRTLKEEGHVISWEKFEEELWARFGPSGCEDFDEALSRIKQLGTLRDYQREFEKLGN 161

Query: 10  MV 5
            V
Sbjct: 162 RV 163


>gb|ABA97314.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1219

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
 Frame = -2

Query: 334 RTLRIDFPKFDGKDLE----RCGC-FKLNNIKILIKFQLRMVP*ASLYLQGDVVSWYRRI 170
           R  ++DFPKFDG D E    RC   F +NN      F    +  A++Y  G   SW R  
Sbjct: 149 RVPKLDFPKFDGTDPEDWKMRCEHHFDVNNT-----FPGLWIRIATIYFSGRAASWLRSS 203

Query: 169 KQSLGILIWHQLSLELCFRFGSRKNIDLCSSLAKLSQTGIVREFIAEFERLVNMV 5
           K  +   +W    + +  +F   ++  L   +  + QTGIV E+   F+ L+N +
Sbjct: 204 KAHVRFPVWENFCIAVSHKFDRDQHETLIRQMDSIKQTGIVWEYYERFDELMNQL 258


>emb|CAN76938.1| hypothetical protein VITISV_025425 [Vitis vinifera]
          Length = 446

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
 Frame = -2

Query: 352 GVVIQGRTLRIDFPKFDGKDLERCGCFKLNNIKILIKF-QLRMVP*ASLYLQGDVVSWYR 176
           G VI  R  ++DFP+F+G +       ++       K  +   VP A+ +L+G+   WY+
Sbjct: 148 GAVIP-RVTKLDFPRFNGSEDPTSWICRVEQFFEFQKIAEEEKVPLATYHLEGEAQLWYQ 206

Query: 175 RIKQSLGILIWHQLSLELCFRFGSRKNIDLCSSLAKLSQTGIVREFIAEFERLVNMV 5
            +K+  G + W  L   L  R+G  +  D    L +L Q G VRE+ ++FE+L++ V
Sbjct: 207 ILKEE-GEVAWLTLKEGLNSRYGPTEFDDFFGDLTRLKQVGSVREYQSQFEKLLSRV 262