BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024932
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana taba...   204   5e-51
emb|CBI18915.3| unnamed protein product [Vitis vinifera]              204   8e-51
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   204   8e-51
gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orient...   204   8e-51
gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum ...   204   8e-51

>gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
          Length = 1010

 Score =  204 bits (520), Expect = 5e-51
 Identities = 107/142 (75%), Positives = 114/142 (80%)
 Frame = +2

Query: 2   RGELLTGILCKKTLGTSTGSLIHVVWEEVGPDAARKFLGNTQWLVNYWLLQNGFSIGIGX 181
           +GELLTG LCKKTLGTSTGSLIHV+WEEVGPDAARKFLG+TQWLVNYWLLQN FSIGIG 
Sbjct: 546 KGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG- 604

Query: 182 XXXXXXXXXXXXXXXXTMEIINKTISNAKTEVNELIRTAQENQLGPEPGLTRMESFENRV 361
                           TME IN+TISNAK++V ELI+ AQE QL  EPG T MESFENRV
Sbjct: 605 ---------DTIADASTMEKINETISNAKSKVKELIKAAQEKQLEAEPGRTMMESFENRV 655

Query: 362 NQVLNKARDDAGSRAEKSLSES 427
           NQVLNKARDDAGS AEKSLSES
Sbjct: 656 NQVLNKARDDAGSSAEKSLSES 677


>emb|CBI18915.3| unnamed protein product [Vitis vinifera]
          Length = 1565

 Score =  204 bits (518), Expect = 8e-51
 Identities = 107/142 (75%), Positives = 112/142 (78%)
 Frame = +2

Query: 2    RGELLTGILCKKTLGTSTGSLIHVVWEEVGPDAARKFLGNTQWLVNYWLLQNGFSIGIGX 181
            +GELL G LCKKTLGTSTGSLIHV+WEEVGPDAARKFLG+TQWLVNYWLLQNGFSIGIG 
Sbjct: 675  KGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG- 733

Query: 182  XXXXXXXXXXXXXXXXTMEIINKTISNAKTEVNELIRTAQENQLGPEPGLTRMESFENRV 361
                            TME IN+TIS AK EV ELIR AQE QL  EPG T MESFENRV
Sbjct: 734  ---------DTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRV 784

Query: 362  NQVLNKARDDAGSRAEKSLSES 427
            NQVLNKARDDAGS A+KSLSES
Sbjct: 785  NQVLNKARDDAGSSAQKSLSES 806


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score =  204 bits (518), Expect = 8e-51
 Identities = 107/142 (75%), Positives = 112/142 (78%)
 Frame = +2

Query: 2    RGELLTGILCKKTLGTSTGSLIHVVWEEVGPDAARKFLGNTQWLVNYWLLQNGFSIGIGX 181
            +GELL G LCKKTLGTSTGSLIHV+WEEVGPDAARKFLG+TQWLVNYWLLQNGFSIGIG 
Sbjct: 627  KGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG- 685

Query: 182  XXXXXXXXXXXXXXXXTMEIINKTISNAKTEVNELIRTAQENQLGPEPGLTRMESFENRV 361
                            TME IN+TIS AK EV ELIR AQE QL  EPG T MESFENRV
Sbjct: 686  ---------DTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRV 736

Query: 362  NQVLNKARDDAGSRAEKSLSES 427
            NQVLNKARDDAGS A+KSLSES
Sbjct: 737  NQVLNKARDDAGSSAQKSLSES 758


>gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
          Length = 1010

 Score =  204 bits (518), Expect = 8e-51
 Identities = 107/142 (75%), Positives = 111/142 (78%)
 Frame = +2

Query: 2   RGELLTGILCKKTLGTSTGSLIHVVWEEVGPDAARKFLGNTQWLVNYWLLQNGFSIGIGX 181
           RGELLTG LCKK LGTSTGSLIHV+WEEVGPDAARKFLG+TQWLVNYWLLQNGFSIGIG 
Sbjct: 546 RGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG- 604

Query: 182 XXXXXXXXXXXXXXXXTMEIINKTISNAKTEVNELIRTAQENQLGPEPGLTRMESFENRV 361
                           TME IN TIS AK EV +LIR AQE  L PEPG T MESFENRV
Sbjct: 605 ---------DTIADASTMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRV 655

Query: 362 NQVLNKARDDAGSRAEKSLSES 427
           NQVLNKARDDAGS A+KSLSES
Sbjct: 656 NQVLNKARDDAGSSAQKSLSES 677


>gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
          Length = 1010

 Score =  204 bits (518), Expect = 8e-51
 Identities = 107/142 (75%), Positives = 112/142 (78%)
 Frame = +2

Query: 2   RGELLTGILCKKTLGTSTGSLIHVVWEEVGPDAARKFLGNTQWLVNYWLLQNGFSIGIGX 181
           RGELL G LCKKTLGTSTGSLIHV+WEEVGPDAARKFLG+TQWLVNYWLLQNGFSIGIG 
Sbjct: 546 RGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIG- 604

Query: 182 XXXXXXXXXXXXXXXXTMEIINKTISNAKTEVNELIRTAQENQLGPEPGLTRMESFENRV 361
                           TME IN+TIS AK EV ELI+ AQE QL  EPG T MESFENRV
Sbjct: 605 ---------DTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRV 655

Query: 362 NQVLNKARDDAGSRAEKSLSES 427
           NQVLNKARDDAGS A+KSLSES
Sbjct: 656 NQVLNKARDDAGSSAQKSLSES 677