BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024914
         (737 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containi...   382   e-104
emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]   382   e-104
ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containi...   350   2e-94
ref|XP_002303975.1| predicted protein [Populus trichocarpa] gi|2...   349   3e-94
ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [S...   338   5e-91

>ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  382 bits (981), Expect = e-104
 Identities = 183/244 (75%), Positives = 215/244 (88%)
 Frame = +2

Query: 5   DARRLFDGMPTRDVVSWNAMLAGYSKVGDLESARILFEKMSERNVISWTTVIAGYAQMNH 184
           +AR+LFDG+  RDV  WNAM+AGY+KVGD+++AR LFE+M ERNVISWT VIAGYAQM+ 
Sbjct: 192 EARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDR 251

Query: 185 PNEAIQIFRRMQLEDVKPDEIAMLAALSACAHLGALELGKWIHDYIDKCGIPKIVPLSNA 364
           PNEAI +FRRMQLE+V+PDEIAMLAALSACAHLGALELG+WIH+YIDK G+ KIVPL+NA
Sbjct: 252 PNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNA 311

Query: 365 LIDMYVKSGSIEKALEVFEKMKRRSVITWTTMIAGFALHGSGKEALEMFSRMERERVRPN 544
           LIDMY K G IEKALEVF+ M+ +SVITWT+MI G ALHG G+EALEMFS MER R++PN
Sbjct: 312 LIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPN 371

Query: 545 DVTFLAILSACSHVGLVEMGRWYFNSMSTRYQMTPKIEHYGCMIDLLGRAGYLREAHELV 724
           ++TF+AILSAC HVGLVEMGRWYF  M T+Y + PKI+HYGCMIDLLGRAG+L+EA ELV
Sbjct: 372 EITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELV 431

Query: 725 REMP 736
           R MP
Sbjct: 432 RGMP 435



 Score = 99.4 bits (246), Expect = 7e-19
 Identities = 63/263 (23%), Positives = 119/263 (45%), Gaps = 31/263 (11%)
 Frame = +2

Query: 38  RDVVSWNAMLAGYSKVGDLESARILFEKMSERNVISWTTVIAGYAQMNHPNEAIQIFRRM 217
           +D +  +  +   S +G    +  +F   +  ++  + T+I   +      EAI ++ R+
Sbjct: 71  QDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRI 130

Query: 218 QLEDVKPDEIAMLAALSACAHLGALELGKWIHDYIDKCGIPKIVPLSNALIDMYVKSGSI 397
              D++ D  ++   L A   L A+ +G+ IH      G+   + +  ALI MY   G +
Sbjct: 131 LASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCV 190

Query: 398 EKALEVFEKMKRRSVITWTTMIAGFALHGS------------------------------ 487
            +A ++F+ +  R V  W  M+AG+A  G                               
Sbjct: 191 SEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMD 250

Query: 488 -GKEALEMFSRMERERVRPNDVTFLAILSACSHVGLVEMGRWYFNSMSTRYQMTPKIEHY 664
              EA+ MF RM+ E V P+++  LA LSAC+H+G +E+G W  N +  ++ ++  +   
Sbjct: 251 RPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYID-KHGLSKIVPLN 309

Query: 665 GCMIDLLGRAGYLREAHELVREM 733
             +ID+  + G + +A E+ + M
Sbjct: 310 NALIDMYAKCGKIEKALEVFKNM 332


>emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  382 bits (981), Expect = e-104
 Identities = 183/244 (75%), Positives = 215/244 (88%)
 Frame = +2

Query: 5   DARRLFDGMPTRDVVSWNAMLAGYSKVGDLESARILFEKMSERNVISWTTVIAGYAQMNH 184
           +AR+LFDG+  RDV  WNAM+AGY+KVGD+++AR LFE+M ERNVISWT VIAGYAQM+ 
Sbjct: 192 EARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDR 251

Query: 185 PNEAIQIFRRMQLEDVKPDEIAMLAALSACAHLGALELGKWIHDYIDKCGIPKIVPLSNA 364
           PNEAI +FRRMQLE+V+PDEIAMLAALSACAHLGALELG+WIH+YIDK G+ KIVPL+NA
Sbjct: 252 PNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNA 311

Query: 365 LIDMYVKSGSIEKALEVFEKMKRRSVITWTTMIAGFALHGSGKEALEMFSRMERERVRPN 544
           LIDMY K G IEKALEVF+ M+ +SVITWT+MI G ALHG G+EALEMFS MER R++PN
Sbjct: 312 LIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPN 371

Query: 545 DVTFLAILSACSHVGLVEMGRWYFNSMSTRYQMTPKIEHYGCMIDLLGRAGYLREAHELV 724
           ++TF+AILSAC HVGLVEMGRWYF  M T+Y + PKI+HYGCMIDLLGRAG+L+EA ELV
Sbjct: 372 EITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELV 431

Query: 725 REMP 736
           R MP
Sbjct: 432 RGMP 435



 Score = 99.4 bits (246), Expect = 7e-19
 Identities = 63/263 (23%), Positives = 119/263 (45%), Gaps = 31/263 (11%)
 Frame = +2

Query: 38  RDVVSWNAMLAGYSKVGDLESARILFEKMSERNVISWTTVIAGYAQMNHPNEAIQIFRRM 217
           +D +  +  +   S +G    +  +F   +  ++  + T+I   +      EAI ++ R+
Sbjct: 71  QDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRI 130

Query: 218 QLEDVKPDEIAMLAALSACAHLGALELGKWIHDYIDKCGIPKIVPLSNALIDMYVKSGSI 397
              D++ D  ++   L A   L A+ +G+ IH      G+   + +  ALI MY   G +
Sbjct: 131 LASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCV 190

Query: 398 EKALEVFEKMKRRSVITWTTMIAGFALHGS------------------------------ 487
            +A ++F+ +  R V  W  M+AG+A  G                               
Sbjct: 191 SEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMD 250

Query: 488 -GKEALEMFSRMERERVRPNDVTFLAILSACSHVGLVEMGRWYFNSMSTRYQMTPKIEHY 664
              EA+ MF RM+ E V P+++  LA LSAC+H+G +E+G W  N +  ++ ++  +   
Sbjct: 251 RPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYID-KHGLSKIVPLN 309

Query: 665 GCMIDLLGRAGYLREAHELVREM 733
             +ID+  + G + +A E+ + M
Sbjct: 310 NALIDMYAKCGKIEKALEVFKNM 332


>ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
           gi|449493602|ref|XP_004159370.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  350 bits (897), Expect = 2e-94
 Identities = 166/244 (68%), Positives = 211/244 (86%)
 Frame = +2

Query: 5   DARRLFDGMPTRDVVSWNAMLAGYSKVGDLESARILFEKMSERNVISWTTVIAGYAQMNH 184
           DAR+LFD +  +DV  WNAM+AGY KVG+L+SAR +F +M +RNVISWTT+IAGYAQ N 
Sbjct: 175 DARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNR 234

Query: 185 PNEAIQIFRRMQLEDVKPDEIAMLAALSACAHLGALELGKWIHDYIDKCGIPKIVPLSNA 364
           P+EAI++FR+MQLE+V+PDEIAMLA LSACA LGALELG+WIH+YI+K G+ +IV L NA
Sbjct: 235 PHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNA 294

Query: 365 LIDMYVKSGSIEKALEVFEKMKRRSVITWTTMIAGFALHGSGKEALEMFSRMERERVRPN 544
           LIDMY KSG+I +ALEVFE MK++SVITW+T+IA  ALHG G EA++MF RME+ +VRPN
Sbjct: 295 LIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPN 354

Query: 545 DVTFLAILSACSHVGLVEMGRWYFNSMSTRYQMTPKIEHYGCMIDLLGRAGYLREAHELV 724
           +VTF+AILSACSHVG+V++GR+YF+ M + Y++ PKIEHYGCMIDLL RAGYL+EA +L+
Sbjct: 355 EVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLL 414

Query: 725 REMP 736
            +MP
Sbjct: 415 HDMP 418



 Score =  104 bits (259), Expect = 2e-20
 Identities = 59/239 (24%), Positives = 116/239 (48%), Gaps = 31/239 (12%)
 Frame = +2

Query: 110 LFEKMSERNVISWTTVIAGYAQMNHPNEAIQIFRRMQLEDVKPDEIAMLAALSACAHLGA 289
           +F   +  ++  + T I   ++ + P  AI ++ R++++ ++PD  ++ + L A   L A
Sbjct: 78  IFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSA 137

Query: 290 LELGKWIHDYIDKCGIPKIVPLSNALIDMYVKSGSIEKALEVFEKMKRRSVITWTTMIAG 469
           +E+G+ IH       +   V ++ +LI MY   G +  A ++F+ +  + V  W  M+AG
Sbjct: 138 VEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAG 197

Query: 470 FALHGSGK-------------------------------EALEMFSRMERERVRPNDVTF 556
           +   G  K                               EA+E+F +M+ E V P+++  
Sbjct: 198 YVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAM 257

Query: 557 LAILSACSHVGLVEMGRWYFNSMSTRYQMTPKIEHYGCMIDLLGRAGYLREAHELVREM 733
           LA+LSAC+ +G +E+G W  N +  ++ +   +  Y  +ID+  ++G +R A E+   M
Sbjct: 258 LAVLSACADLGALELGEWIHNYIE-KHGLCRIVSLYNALIDMYAKSGNIRRALEVFENM 315


>ref|XP_002303975.1| predicted protein [Populus trichocarpa] gi|222841407|gb|EEE78954.1|
           predicted protein [Populus trichocarpa]
          Length = 508

 Score =  349 bits (896), Expect = 3e-94
 Identities = 171/247 (69%), Positives = 204/247 (82%), Gaps = 3/247 (1%)
 Frame = +2

Query: 5   DARRLFDGMP--TRDVVSWNAMLAGYSKVGDLESARILFEKMSERNVISWTTVIAGYAQM 178
           DAR++FDGM   T DV  WNAML GY+K GDL +AR LFE+M +RNVISWT +I GYAQ 
Sbjct: 133 DARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQA 192

Query: 179 NHPNEAIQIFRRMQLEDVKPDEIAMLAALSACAHLGALELGKWIHDYIDKCGIPKI-VPL 355
           N P++AI +FRRMQLE+V+PDEIAML AL+ACA LGALELG+WI  YID+ G+    +PL
Sbjct: 193 NRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPL 252

Query: 356 SNALIDMYVKSGSIEKALEVFEKMKRRSVITWTTMIAGFALHGSGKEALEMFSRMERERV 535
           +NALIDMY KSG I+ AL+VFE M  +++ITWTTMIAG ALHG G EALEMFSRMER RV
Sbjct: 253 NNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARV 312

Query: 536 RPNDVTFLAILSACSHVGLVEMGRWYFNSMSTRYQMTPKIEHYGCMIDLLGRAGYLREAH 715
           +PND+TF+AILSACSHVGLV+ GRWYFN M +RY + PKIEHYGCMIDLLGRAG+L+EA 
Sbjct: 313 KPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQ 372

Query: 716 ELVREMP 736
            L+ +MP
Sbjct: 373 TLLAQMP 379



 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 52/219 (23%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
 Frame = +2

Query: 182 HPNEAIQIFRRMQLEDVKPDEIAMLAALSACAHLGALELGKWIHDYIDKCGIPKIVPLSN 361
           HP  +I ++  +QL  ++PD  +   AL A     +++ G+ +H    + G+   + +  
Sbjct: 58  HPKASIFLYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLT 117

Query: 362 ALIDMY-----------------------------------VKSGSIEKALEVFEKMKRR 436
           A + MY                                    K G +  A ++FE+M +R
Sbjct: 118 AFVQMYSSFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQR 177

Query: 437 SVITWTTMIAGFALHGSGKEALEMFSRMERERVRPNDVTFLAILSACSHVGLVEMGRWYF 616
           +VI+WT +I G+A      +A+ +F RM+ E V P+++  L  L+AC+ +G +E+G W  
Sbjct: 178 NVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIR 237

Query: 617 NSMSTRYQMTPKIEHYGCMIDLLGRAGYLREAHELVREM 733
           + +     +T  I     +ID+  ++G ++ A ++   M
Sbjct: 238 HYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENM 276


>ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
           gi|241927367|gb|EES00512.1| hypothetical protein
           SORBIDRAFT_03g010050 [Sorghum bicolor]
          Length = 506

 Score =  338 bits (868), Expect = 5e-91
 Identities = 153/244 (62%), Positives = 201/244 (82%)
 Frame = +2

Query: 5   DARRLFDGMPTRDVVSWNAMLAGYSKVGDLESARILFEKMSERNVISWTTVIAGYAQMNH 184
           DAR +F  M  RDVV+WN M+AGY K GDL  AR LF+ M ERNV+SWTTVI GYAQM  
Sbjct: 132 DARSVFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRR 191

Query: 185 PNEAIQIFRRMQLEDVKPDEIAMLAALSACAHLGALELGKWIHDYIDKCGIPKIVPLSNA 364
           P EA+++FRRMQ+E ++PD +A+L+ LSAC  LGA++LG+W+H ++ + G+ + +PL N+
Sbjct: 192 PEEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNS 251

Query: 365 LIDMYVKSGSIEKALEVFEKMKRRSVITWTTMIAGFALHGSGKEALEMFSRMERERVRPN 544
           +IDMY+K G IEKA+EVFE M+ +SV+TWTT+IAGFALHG G +A+EMF RMERE + PN
Sbjct: 252 IIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPN 311

Query: 545 DVTFLAILSACSHVGLVEMGRWYFNSMSTRYQMTPKIEHYGCMIDLLGRAGYLREAHELV 724
           DVTFLAILSACSHVGL ++GRWYFN M ++Y++ P++EHYGCM+DLLGRAG L+EA +LV
Sbjct: 312 DVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLV 371

Query: 725 REMP 736
           ++MP
Sbjct: 372 KDMP 375