BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024895
         (533 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containi...   176   1e-42
ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   168   5e-40
emb|CBI16436.3| unnamed protein product [Vitis vinifera]              157   7e-37
ref|XP_003619639.1| Pentatricopeptide repeat-containing protein ...   150   1e-34
ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containi...   142   3e-32

>ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  176 bits (447), Expect = 1e-42
 Identities = 94/170 (55%), Positives = 112/170 (65%)
 Frame = +2

Query: 5   FKKPSHSNNQRLVSLLEPCKTMTQINQIHAQLITTGLIHHPIPXXXXXXXXXXXXXXXXX 184
           FKKP +SN  +L SL E CK+M QI Q HA LITTGLI HPI                  
Sbjct: 8   FKKPLNSNQLQLFSL-ESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLS 66

Query: 185 YAHNVFAQLLYPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDSSVVPNRYTFVFVLKA 364
           YAH +F Q+  PD+FIYNTMIKAH      S  S+ +F S VR S  +PNRYTFVFV KA
Sbjct: 67  YAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKA 126

Query: 365 CSCGLRILEGEQVCAHAVKLGLDSNVFVVNVMIKMYAEFGLVGFARKVFD 514
           C  GL +LEGEQ+  HA+K+GL+SN+FV N MI+MYA +GLV  AR+VFD
Sbjct: 127 CGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFD 176


>ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  168 bits (425), Expect = 5e-40
 Identities = 89/168 (52%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
 Frame = +2

Query: 11  KPSHSNN-QRLVSLLEPCKTMTQINQIHAQLITTGLIHHPIPXXXXXXXXXXXXXXXXXY 187
           KP HS++  RLVSL++ CK+M QI Q HAQLITT LI HP+                  Y
Sbjct: 9   KPFHSDHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAACASLS---Y 65

Query: 188 AHNVFAQLLYPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDSSVVPNRYTFVFVLKAC 367
           AH +F Q+  PD+FIYNTMIKAH  + H    SL+VFRS  +D  + PNRY+FVF   AC
Sbjct: 66  AHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSAC 125

Query: 368 SCGLRILEGEQVCAHAVKLGLDSNVFVVNVMIKMYAEFGLVGFARKVF 511
             GL + EGEQV  HAVK+GL++NVFVVN +I MY ++GLVG ++KVF
Sbjct: 126 GNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVF 173


>emb|CBI16436.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  157 bits (398), Expect = 7e-37
 Identities = 82/149 (55%), Positives = 97/149 (65%)
 Frame = +2

Query: 68  MTQINQIHAQLITTGLIHHPIPXXXXXXXXXXXXXXXXXYAHNVFAQLLYPDIFIYNTMI 247
           M QI Q HA LITTGLI HPI                  YAH +F Q+  PD+FIYNTMI
Sbjct: 1   MNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMI 60

Query: 248 KAHIPNAHFSPGSLLVFRSAVRDSSVVPNRYTFVFVLKACSCGLRILEGEQVCAHAVKLG 427
           KAH      S  S+ +F S VR S  +PNRYTFVFV KAC  GL +LEGEQ+  HA+K+G
Sbjct: 61  KAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIG 120

Query: 428 LDSNVFVVNVMIKMYAEFGLVGFARKVFD 514
           L+SN+FV N MI+MYA +GLV  AR+VFD
Sbjct: 121 LESNLFVTNAMIRMYANWGLVDEARRVFD 149


>ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355494654|gb|AES75857.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  150 bits (378), Expect = 1e-34
 Identities = 82/169 (48%), Positives = 104/169 (61%), Gaps = 1/169 (0%)
 Frame = +2

Query: 11  KPSHS-NNQRLVSLLEPCKTMTQINQIHAQLITTGLIHHPIPXXXXXXXXXXXXXXXXXY 187
           KP H  N+ +L SL++ CK++ QI Q HA LITT  I  P+                  Y
Sbjct: 172 KPFHYVNHSKLSSLIDLCKSINQIKQTHANLITTAQITLPV---IANKFLKNVALASLTY 228

Query: 188 AHNVFAQLLYPDIFIYNTMIKAHIPNAHFSPGSLLVFRSAVRDSSVVPNRYTFVFVLKAC 367
           AH +F Q+  PD+FIYNTMIK+H  + H    S+ VFRS +RDS   PNRY+FVF   AC
Sbjct: 229 AHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGAC 288

Query: 368 SCGLRILEGEQVCAHAVKLGLDSNVFVVNVMIKMYAEFGLVGFARKVFD 514
             G+ + EGEQV  HAVK+GLD NVFVVN +I M+ ++G V  AR VFD
Sbjct: 289 GNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFD 337


>ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
           gi|449516005|ref|XP_004165038.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  142 bits (358), Expect = 3e-32
 Identities = 75/160 (46%), Positives = 95/160 (59%)
 Frame = +2

Query: 47  LLEPCKTMTQINQIHAQLITTGLIHHPIPXXXXXXXXXXXXXXXXXYAHNVFAQLLYPDI 226
           LL  CK+  QI Q+HA+LITTGLI HPIP                 YAH VF     PD+
Sbjct: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPIS-YAHMVFDHFPQPDL 65

Query: 227 FIYNTMIKAHIPNAHFSPGSLLVFRSAVRDSSVVPNRYTFVFVLKACSCGLRILEGEQVC 406
           F+YNT+IK    +   S  S   FRS +R+  +VPN+Y+F F  K C  G+ +LEGEQV 
Sbjct: 66  FLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVR 125

Query: 407 AHAVKLGLDSNVFVVNVMIKMYAEFGLVGFARKVFDGTSN 526
            HA+KLGL++N+FV N +I MY     V  ARKVFD + N
Sbjct: 126 VHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPN 165