BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024891
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   203   1e-50
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   203   1e-50
ref|XP_004161719.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA...   187   1e-45
ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transc...   187   1e-45
ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transc...   177   1e-42

>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  203 bits (517), Expect = 1e-50
 Identities = 98/135 (72%), Positives = 114/135 (84%)
 Frame = -2

Query: 406 MAEIEDLQDHRNLKFAPLCIKDPREYFDSQQANAIRTLDETEIGTNPINCGLSAQEAYGS 227
           M EIEDLQ  R+L FA LCIKDPR+YFDSQQANA++TL +T  G+  I C LS+QEAYGS
Sbjct: 430 MTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSSQEAYGS 489

Query: 226 LKNLISEMKRTGFSDPVVRPDVALKVLNGLTQHLSSTKFHLGKSPQESVLDTLPKRTKEE 47
           L+  ISE+K  G SDP+V+PD+ALKVLNGLTQ++SSTKFHLGK+PQESVLD LP  TKEE
Sbjct: 490 LRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEE 549

Query: 46  LLHHWASIQELLKHF 2
           LLHHW SIQELL+HF
Sbjct: 550 LLHHWTSIQELLRHF 564


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1 [Vitis vinifera]
           gi|296090002|emb|CBI39821.3| unnamed protein product
           [Vitis vinifera]
          Length = 602

 Score =  203 bits (516), Expect = 1e-50
 Identities = 98/135 (72%), Positives = 113/135 (83%)
 Frame = -2

Query: 406 MAEIEDLQDHRNLKFAPLCIKDPREYFDSQQANAIRTLDETEIGTNPINCGLSAQEAYGS 227
           M EIEDLQ  R+L FA LCIKDPR+YFDSQQANA++TL +T  G+  I C LS QEAYGS
Sbjct: 387 MTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEAYGS 446

Query: 226 LKNLISEMKRTGFSDPVVRPDVALKVLNGLTQHLSSTKFHLGKSPQESVLDTLPKRTKEE 47
           L+  ISE+K  G SDP+V+PD+ALKVLNGLTQ++SSTKFHLGK+PQESVLD LP  TKEE
Sbjct: 447 LRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEE 506

Query: 46  LLHHWASIQELLKHF 2
           LLHHW SIQELL+HF
Sbjct: 507 LLHHWTSIQELLRHF 521


>ref|XP_004161719.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA polymerase II
           transcription factor B subunit 1-1-like [Cucumis
           sativus]
          Length = 553

 Score =  187 bits (474), Expect = 1e-45
 Identities = 88/135 (65%), Positives = 108/135 (80%)
 Frame = -2

Query: 406 MAEIEDLQDHRNLKFAPLCIKDPREYFDSQQANAIRTLDETEIGTNPINCGLSAQEAYGS 227
           M  IEDLQ   +  FAPLCIKDPR+YFD+QQANAI+TLD+T  G     C LS  EAYGS
Sbjct: 220 MTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGS 279

Query: 226 LKNLISEMKRTGFSDPVVRPDVALKVLNGLTQHLSSTKFHLGKSPQESVLDTLPKRTKEE 47
           L+  ISE+K +GF+ P+++P+VAL V NGLTQ++SSTK+ LGK+PQES+L++LP  TKEE
Sbjct: 280 LRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEE 339

Query: 46  LLHHWASIQELLKHF 2
           LLHHW SIQELLKHF
Sbjct: 340 LLHHWISIQELLKHF 354


>ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Cucumis sativus]
          Length = 729

 Score =  187 bits (474), Expect = 1e-45
 Identities = 88/135 (65%), Positives = 108/135 (80%)
 Frame = -2

Query: 406 MAEIEDLQDHRNLKFAPLCIKDPREYFDSQQANAIRTLDETEIGTNPINCGLSAQEAYGS 227
           M  IEDLQ   +  FAPLCIKDPR+YFD+QQANAI+TLD+T  G     C LS  EAYGS
Sbjct: 514 MTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGS 573

Query: 226 LKNLISEMKRTGFSDPVVRPDVALKVLNGLTQHLSSTKFHLGKSPQESVLDTLPKRTKEE 47
           L+  ISE+K +GF+ P+++P+VAL V NGLTQ++SSTK+ LGK+PQES+L++LP  TKEE
Sbjct: 574 LRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEE 633

Query: 46  LLHHWASIQELLKHF 2
           LLHHW SIQELLKHF
Sbjct: 634 LLHHWISIQELLKHF 648


>ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Glycine max]
          Length = 604

 Score =  177 bits (448), Expect = 1e-42
 Identities = 84/135 (62%), Positives = 105/135 (77%)
 Frame = -2

Query: 406 MAEIEDLQDHRNLKFAPLCIKDPREYFDSQQANAIRTLDETEIGTNPINCGLSAQEAYGS 227
           M  IEDLQ   N  +APLCIKDPR+YFDSQQANA++TLD+++ G   + C L ++EAY S
Sbjct: 390 MTPIEDLQAQDNHPYAPLCIKDPRDYFDSQQANAVKTLDDSQAGMEQMKCSLGSEEAYDS 449

Query: 226 LKNLISEMKRTGFSDPVVRPDVALKVLNGLTQHLSSTKFHLGKSPQESVLDTLPKRTKEE 47
           L+  IS++K TG  DP+  PDVALKVLNGLT++++STK+HLGKS QESVLD LP  TKE+
Sbjct: 450 LRASISKIKTTGLRDPLFSPDVALKVLNGLTKNITSTKYHLGKSSQESVLDILPNSTKEK 509

Query: 46  LLHHWASIQELLKHF 2
           LL HW   QELL+HF
Sbjct: 510 LLDHWVCSQELLRHF 524