BLASTX nr result
ID: Coptis24_contig00024880
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00024880 (548 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 132 4e-29 gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 114 8e-24 emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 108 4e-22 gb|EEE68778.1| hypothetical protein OsJ_27492 [Oryza sativa Japo... 107 1e-21 gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 107 1e-21 >gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa Japonica Group] Length = 1382 Score = 132 bits (332), Expect = 4e-29 Identities = 70/180 (38%), Positives = 95/180 (52%) Frame = -3 Query: 546 CRRAGSSSTVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEGVFCVPAVGLRGG 367 CR GS++TV L L++ +P ++ LSE K+++K+ + L F G F V GL GG Sbjct: 13 CRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAVSCEGLSGG 72 Query: 366 LAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNRHKVWKEIRELAP 187 LA+FW + + + G N+ V PW S VYGEP RH W +R L Sbjct: 73 LALFWTTAYTVSLRGF-NSHFIDVLVSTEELPPWRISFVYGEPKRELRHFFWNLLRRLHD 131 Query: 186 YILDPWLLFGDFNAITSLDEKVGGNRCFNKSMLEFNALINDLGLFDLGYSGPKFTWSNNR 7 PWL GDFN + LDE +G M F + ++D GL DLG+ GPKFTWSN + Sbjct: 132 QWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQ 191 >gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1374 Score = 114 bits (286), Expect = 8e-24 Identities = 56/180 (31%), Positives = 96/180 (53%) Frame = -3 Query: 546 CRRAGSSSTVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEGVFCVPAVGLRGG 367 C+ G++ TV+HL ++ Y P+VI L E K + + V L F + V +G GG Sbjct: 8 CQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVEPIGKSGG 67 Query: 366 LAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNRHKVWKEIRELAP 187 LA+ WK V ++++ + + + ++ + +YGEP+ + R ++W+ + L Sbjct: 68 LALMWKDSVQIKVLQSDKRLIDALLI--WQDKEFYLTCIYGEPVQAERGELWERLTRLGL 125 Query: 186 YILDPWLLFGDFNAITSLDEKVGGNRCFNKSMLEFNALINDLGLFDLGYSGPKFTWSNNR 7 PW+L GDFN + EK+GG S LEF ++N GL+++ +SG +F+W NR Sbjct: 126 SRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNR 185 >emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1355 Score = 108 bits (271), Expect = 4e-22 Identities = 61/182 (33%), Positives = 87/182 (47%) Frame = -3 Query: 546 CRRAGSSSTVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEGVFCVPAVGLRGG 367 CR G+ +V+ L Q+ PD+I +SE + + + A+ L F F V +VG GG Sbjct: 8 CRGLGNPWSVRQLRSWSNQFAPDIIFVSETMINKIEVEALKSWLGFSNAFGVASVGRAGG 67 Query: 366 LAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNRHKVWKEIRELAP 187 L ++WK V ++ + + + G D + W F VYG +H W +R L Sbjct: 68 LCLYWKEEVMFSLVSFSQHHICGDVED--GNKKWRFVGVYGWAKEEEKHLTWSLLRHLCE 125 Query: 186 YILDPWLLFGDFNAITSLDEKVGGNRCFNKSMLEFNALINDLGLFDLGYSGPKFTWSNNR 7 P LL GDFN I S EK GG + M+ F ++ L L DLGY G +TW R Sbjct: 126 DTSLPILLGGDFNEILSAAEKEGGANRVRREMINFRDTLDTLALRDLGYVGTWYTWERGR 185 Query: 6 QP 1 P Sbjct: 186 SP 187 >gb|EEE68778.1| hypothetical protein OsJ_27492 [Oryza sativa Japonica Group] Length = 1170 Score = 107 bits (267), Expect = 1e-21 Identities = 55/178 (30%), Positives = 89/178 (50%) Frame = -3 Query: 546 CRRAGSSSTVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEGVFCVPAVGLRGG 367 CR G VQ L+ +++ ++P V+ LSE + + + + Q+ G V +G GG Sbjct: 99 CRGLGRPRAVQELVCMVQTHRPKVVFLSETRQNQGFVENIKWQIGLRGCLAVNGIGKGGG 158 Query: 366 LAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNRHKVWKEIRELAP 187 +A+FW VN+ I + + + PW + VYGEP + +RH +W +R + Sbjct: 159 IALFWDESVNVTIKSYNLRHIDAVITEQNQD-PWRATFVYGEPKAQDRHLMWTLLRRIKQ 217 Query: 186 YILDPWLLFGDFNAITSLDEKVGGNRCFNKSMLEFNALINDLGLFDLGYSGPKFTWSN 13 DPWL+ DFN E + NR M EF ++++D L DLG+ G +T+ N Sbjct: 218 NTSDPWLMIRDFNEAMWQSEHLSQNRRSETQMREFRSVLSDCDLHDLGFHGIPWTYDN 275 >gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical protein OsJ_32156 [Oryza sativa Japonica Group] Length = 1339 Score = 107 bits (267), Expect = 1e-21 Identities = 57/149 (38%), Positives = 75/149 (50%) Frame = -3 Query: 453 VKEKRILAVAKQLKFEGVFCVPAVGLRGGLAVFWKSGVNLEIIGATNNQVTGKFVDYHAS 274 +++K+ + L F G F V GL GGLA+FW + + + G N+ V Sbjct: 1 MRDKQARNLMWSLGFSGSFAVSCEGLSGGLALFWTTAYTVSLRGF-NSHFIDVLVSTEEL 59 Query: 273 VPWFFSLVYGEPISSNRHKVWKEIRELAPYILDPWLLFGDFNAITSLDEKVGGNRCFNKS 94 PW S VYGEP RH W +R L PWL GDFN + LDE +G Sbjct: 60 PPWRISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPH 119 Query: 93 MLEFNALINDLGLFDLGYSGPKFTWSNNR 7 M F + ++D GL DLG+ GPKFTWSN + Sbjct: 120 MQHFRSCLDDCGLIDLGFVGPKFTWSNKQ 148