BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024880
         (548 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   132   4e-29
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...   114   8e-24
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...   108   4e-22
gb|EEE68778.1| hypothetical protein OsJ_27492 [Oryza sativa Japo...   107   1e-21
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...   107   1e-21

>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score =  132 bits (332), Expect = 4e-29
 Identities = 70/180 (38%), Positives = 95/180 (52%)
 Frame = -3

Query: 546 CRRAGSSSTVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEGVFCVPAVGLRGG 367
           CR  GS++TV  L  L++  +P ++ LSE K+++K+   +   L F G F V   GL GG
Sbjct: 13  CRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAVSCEGLSGG 72

Query: 366 LAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNRHKVWKEIRELAP 187
           LA+FW +   + + G  N+      V      PW  S VYGEP    RH  W  +R L  
Sbjct: 73  LALFWTTAYTVSLRGF-NSHFIDVLVSTEELPPWRISFVYGEPKRELRHFFWNLLRRLHD 131

Query: 186 YILDPWLLFGDFNAITSLDEKVGGNRCFNKSMLEFNALINDLGLFDLGYSGPKFTWSNNR 7
               PWL  GDFN +  LDE +G        M  F + ++D GL DLG+ GPKFTWSN +
Sbjct: 132 QWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQ 191


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score =  114 bits (286), Expect = 8e-24
 Identities = 56/180 (31%), Positives = 96/180 (53%)
 Frame = -3

Query: 546 CRRAGSSSTVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEGVFCVPAVGLRGG 367
           C+  G++ TV+HL ++   Y P+VI L E K +   +  V   L F  +  V  +G  GG
Sbjct: 8   CQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVEPIGKSGG 67

Query: 366 LAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNRHKVWKEIRELAP 187
           LA+ WK  V ++++ +    +    +       ++ + +YGEP+ + R ++W+ +  L  
Sbjct: 68  LALMWKDSVQIKVLQSDKRLIDALLI--WQDKEFYLTCIYGEPVQAERGELWERLTRLGL 125

Query: 186 YILDPWLLFGDFNAITSLDEKVGGNRCFNKSMLEFNALINDLGLFDLGYSGPKFTWSNNR 7
               PW+L GDFN +    EK+GG      S LEF  ++N  GL+++ +SG +F+W  NR
Sbjct: 126 SRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNR 185


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  108 bits (271), Expect = 4e-22
 Identities = 61/182 (33%), Positives = 87/182 (47%)
 Frame = -3

Query: 546 CRRAGSSSTVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEGVFCVPAVGLRGG 367
           CR  G+  +V+ L     Q+ PD+I +SE  + +  + A+   L F   F V +VG  GG
Sbjct: 8   CRGLGNPWSVRQLRSWSNQFAPDIIFVSETMINKIEVEALKSWLGFSNAFGVASVGRAGG 67

Query: 366 LAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNRHKVWKEIRELAP 187
           L ++WK  V   ++  + + + G   D   +  W F  VYG      +H  W  +R L  
Sbjct: 68  LCLYWKEEVMFSLVSFSQHHICGDVED--GNKKWRFVGVYGWAKEEEKHLTWSLLRHLCE 125

Query: 186 YILDPWLLFGDFNAITSLDEKVGGNRCFNKSMLEFNALINDLGLFDLGYSGPKFTWSNNR 7
               P LL GDFN I S  EK GG     + M+ F   ++ L L DLGY G  +TW   R
Sbjct: 126 DTSLPILLGGDFNEILSAAEKEGGANRVRREMINFRDTLDTLALRDLGYVGTWYTWERGR 185

Query: 6   QP 1
            P
Sbjct: 186 SP 187


>gb|EEE68778.1| hypothetical protein OsJ_27492 [Oryza sativa Japonica Group]
          Length = 1170

 Score =  107 bits (267), Expect = 1e-21
 Identities = 55/178 (30%), Positives = 89/178 (50%)
 Frame = -3

Query: 546 CRRAGSSSTVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEGVFCVPAVGLRGG 367
           CR  G    VQ L+ +++ ++P V+ LSE +  +  +  +  Q+   G   V  +G  GG
Sbjct: 99  CRGLGRPRAVQELVCMVQTHRPKVVFLSETRQNQGFVENIKWQIGLRGCLAVNGIGKGGG 158

Query: 366 LAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNRHKVWKEIRELAP 187
           +A+FW   VN+ I       +     + +   PW  + VYGEP + +RH +W  +R +  
Sbjct: 159 IALFWDESVNVTIKSYNLRHIDAVITEQNQD-PWRATFVYGEPKAQDRHLMWTLLRRIKQ 217

Query: 186 YILDPWLLFGDFNAITSLDEKVGGNRCFNKSMLEFNALINDLGLFDLGYSGPKFTWSN 13
              DPWL+  DFN      E +  NR     M EF ++++D  L DLG+ G  +T+ N
Sbjct: 218 NTSDPWLMIRDFNEAMWQSEHLSQNRRSETQMREFRSVLSDCDLHDLGFHGIPWTYDN 275


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
           protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score =  107 bits (267), Expect = 1e-21
 Identities = 57/149 (38%), Positives = 75/149 (50%)
 Frame = -3

Query: 453 VKEKRILAVAKQLKFEGVFCVPAVGLRGGLAVFWKSGVNLEIIGATNNQVTGKFVDYHAS 274
           +++K+   +   L F G F V   GL GGLA+FW +   + + G  N+      V     
Sbjct: 1   MRDKQARNLMWSLGFSGSFAVSCEGLSGGLALFWTTAYTVSLRGF-NSHFIDVLVSTEEL 59

Query: 273 VPWFFSLVYGEPISSNRHKVWKEIRELAPYILDPWLLFGDFNAITSLDEKVGGNRCFNKS 94
            PW  S VYGEP    RH  W  +R L      PWL  GDFN +  LDE +G        
Sbjct: 60  PPWRISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPH 119

Query: 93  MLEFNALINDLGLFDLGYSGPKFTWSNNR 7
           M  F + ++D GL DLG+ GPKFTWSN +
Sbjct: 120 MQHFRSCLDDCGLIDLGFVGPKFTWSNKQ 148