BLASTX nr result

ID: Coptis24_contig00024768 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024768
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267976.2| PREDICTED: uncharacterized protein LOC100263...    77   2e-12
emb|CBI27347.3| unnamed protein product [Vitis vinifera]               77   2e-12
emb|CAN68733.1| hypothetical protein VITISV_012100 [Vitis vinifera]    77   2e-12
ref|XP_002305260.1| predicted protein [Populus trichocarpa] gi|2...    72   4e-11
ref|XP_002526589.1| DNA binding protein, putative [Ricinus commu...    72   6e-11

>ref|XP_002267976.2| PREDICTED: uncharacterized protein LOC100263252 [Vitis vinifera]
          Length = 495

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 46/98 (46%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
 Frame = -3

Query: 333 SKVVRESSNTDDSPVKAIEIXXXXXXXXXXXXXXXXPVHTVNKKAFVSQEAERSPSPNSS 154
           SKVVRE+S  + +  + IEI                 VH + K   V +   RS SPN S
Sbjct: 106 SKVVRETSGGNTNSAEPIEIPPPRPKRKPVHPYPRKLVHPLRKGISVLEPPVRSVSPNFS 165

Query: 153 ATEEENQSPKSEISAAGSDTLGSTISD-QNGSQSPISS 43
           A+E+ENQSP S +SA GS+TLGST+S+ QNGS SP+SS
Sbjct: 166 ASEQENQSPTSVLSAVGSETLGSTLSNTQNGSPSPVSS 203


>emb|CBI27347.3| unnamed protein product [Vitis vinifera]
          Length = 479

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 46/98 (46%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
 Frame = -3

Query: 333 SKVVRESSNTDDSPVKAIEIXXXXXXXXXXXXXXXXPVHTVNKKAFVSQEAERSPSPNSS 154
           SKVVRE+S  + +  + IEI                 VH + K   V +   RS SPN S
Sbjct: 106 SKVVRETSGGNTNSAEPIEIPPPRPKRKPVHPYPRKLVHPLRKGISVLEPPVRSVSPNFS 165

Query: 153 ATEEENQSPKSEISAAGSDTLGSTISD-QNGSQSPISS 43
           A+E+ENQSP S +SA GS+TLGST+S+ QNGS SP+SS
Sbjct: 166 ASEQENQSPTSVLSAVGSETLGSTLSNTQNGSPSPVSS 203


>emb|CAN68733.1| hypothetical protein VITISV_012100 [Vitis vinifera]
          Length = 543

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 46/98 (46%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
 Frame = -3

Query: 333 SKVVRESSNTDDSPVKAIEIXXXXXXXXXXXXXXXXPVHTVNKKAFVSQEAERSPSPNSS 154
           SKVVRE+S  + +  + IEI                 VH + K   V +   RS SPN S
Sbjct: 154 SKVVRETSGGNTNSAEPIEIPPPRPKRKPVHPYPRKLVHPLRKGISVLEPPVRSVSPNFS 213

Query: 153 ATEEENQSPKSEISAAGSDTLGSTISD-QNGSQSPISS 43
           A+E+ENQSP S +SA GS+TLGST+S+ QNGS SP+SS
Sbjct: 214 ASEQENQSPTSVLSAVGSETLGSTLSNTQNGSPSPVSS 251


>ref|XP_002305260.1| predicted protein [Populus trichocarpa] gi|222848224|gb|EEE85771.1|
           predicted protein [Populus trichocarpa]
          Length = 372

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 43/97 (44%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
 Frame = -3

Query: 333 SKVVRESSNTDDSPVKAIEIXXXXXXXXXXXXXXXXPVHTVNKKAFVSQEAERSPSPNSS 154
           SKVVRES  ++ S V+ IEI                  H + K+  + +++ RS SPN S
Sbjct: 72  SKVVRESGGSNTSSVEPIEIPPPRPKRKPMHPYPRKLAHPLEKELLIPEKSLRSSSPNFS 131

Query: 153 ATEEENQSPKSEISAAGSDTLGSTISD-QNGSQSPIS 46
            +E+ENQSP S +SA GSD LGST SD  N S SP+S
Sbjct: 132 ISEQENQSPTSVLSAVGSDALGSTDSDTPNHSLSPVS 168


>ref|XP_002526589.1| DNA binding protein, putative [Ricinus communis]
           gi|223534083|gb|EEF35801.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 468

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 43/97 (44%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
 Frame = -3

Query: 333 SKVVRESSNTDDSPVKAIEIXXXXXXXXXXXXXXXXPVHTVNKKAFVSQEAERSPSPNSS 154
           SKVVRE S +  S V+ IEI                  H +NK+  ++++  RS SPN S
Sbjct: 85  SKVVREGSGSSTSAVEPIEIPPPRPKRKPMHPYPRKMAHPLNKELSITEQPLRSSSPNFS 144

Query: 153 ATEEENQSPKSEISAAGSDTLGSTISD-QNGSQSPIS 46
            +E+ENQSP S +SA GSD LGST S+  N S SP+S
Sbjct: 145 ISEQENQSPTSVLSAVGSDVLGSTDSNPPNCSSSPMS 181


Top