BLASTX nr result

ID: Coptis24_contig00024762 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024762
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002312513.1| predicted protein [Populus trichocarpa] gi|2...    40   3e-07
ref|XP_002314724.1| predicted protein [Populus trichocarpa] gi|2...    41   8e-07
ref|XP_002521024.1| conserved hypothetical protein [Ricinus comm...    39   1e-06
ref|XP_003517774.1| PREDICTED: uncharacterized protein LOC100799...    38   4e-06
ref|XP_003551189.1| PREDICTED: uncharacterized protein LOC100781...    40   8e-06

>ref|XP_002312513.1| predicted protein [Populus trichocarpa] gi|222852333|gb|EEE89880.1|
           predicted protein [Populus trichocarpa]
          Length = 494

 Score = 39.7 bits (91), Expect(2) = 3e-07
 Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +3

Query: 108 HYPQKSSKVFSNNLAL-DEDEPPSIEAKTPTPKKT 209
           H  Q SS    ++  + DEDEPPSIE++TPTP+KT
Sbjct: 357 HQKQLSSWPVQDSFVIPDEDEPPSIESRTPTPRKT 391



 Score = 39.7 bits (91), Expect(2) = 3e-07
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 196 PQKRHVFMAQDPEKTHHVRQSRAPCNGWDGD 288
           P+K + FM++D EK H  RQ R+  +GWDGD
Sbjct: 388 PRKTYPFMSKDTEKMHQWRQGRSIYSGWDGD 418


>ref|XP_002314724.1| predicted protein [Populus trichocarpa] gi|222863764|gb|EEF00895.1|
           predicted protein [Populus trichocarpa]
          Length = 487

 Score = 41.2 bits (95), Expect(2) = 8e-07
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +1

Query: 196 PQKRHVFMAQDPEKTHHVRQSRAPCNGWDGD 288
           P+K + FM++D EK H  RQSR+  +GWDGD
Sbjct: 383 PRKTYPFMSKDTEKMHQWRQSRSIYSGWDGD 413



 Score = 36.6 bits (83), Expect(2) = 8e-07
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = +3

Query: 108 HYPQKSSK--VFSNNLALDEDEPPSIEAKTPTPKKT 209
           +Y Q+S+   V  + +  DEDEPPS E +TPTP+KT
Sbjct: 351 NYQQQSTSWPVQDSFVIPDEDEPPSTETRTPTPRKT 386


>ref|XP_002521024.1| conserved hypothetical protein [Ricinus communis]
           gi|223539861|gb|EEF41441.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 500

 Score = 39.3 bits (90), Expect(2) = 1e-06
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +3

Query: 156 DEDEPPSIEAKTPTPKKT 209
           DEDEPPSIE +TPTPKKT
Sbjct: 376 DEDEPPSIETRTPTPKKT 393



 Score = 37.7 bits (86), Expect(2) = 1e-06
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +1

Query: 196 PQKRHVFMAQDPEKTHHVRQSRAPCNGWDGD 288
           P+K + FM++D EK H  RQ RA  +GWD D
Sbjct: 390 PKKTYPFMSKDAEKMHQWRQGRAFYSGWDDD 420


>ref|XP_003517774.1| PREDICTED: uncharacterized protein LOC100799483 [Glycine max]
          Length = 508

 Score = 38.1 bits (87), Expect(2) = 4e-06
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 196 PQKRHVFMAQDPEKTHHVRQSRAPCNGWDGD 288
           P+K + FM++D EK   + QSRA  +GWDGD
Sbjct: 389 PRKTYAFMSKDAEKMQQLWQSRAFYSGWDGD 419



 Score = 37.4 bits (85), Expect(2) = 4e-06
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +3

Query: 105 FHYPQKSSKVF---SNNLALDEDEPPSIEAKTPTPKKT 209
           F  PQK    +    + +  DEDEPPSI+ +TPTP+KT
Sbjct: 355 FQQPQKQVNAWPVQESFVIPDEDEPPSIDPRTPTPRKT 392


>ref|XP_003551189.1| PREDICTED: uncharacterized protein LOC100781836 [Glycine max]
          Length = 493

 Score = 40.4 bits (93), Expect(2) = 8e-06
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +1

Query: 196 PQKRHVFMAQDPEKTHHVRQSRAPCNGWDGD 288
           P+K + FM++D EK   +RQSRA  +GWDGD
Sbjct: 384 PRKTYPFMSKDAEKMQQLRQSRAFYSGWDGD 414



 Score = 33.9 bits (76), Expect(2) = 8e-06
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +3

Query: 156 DEDEPPSIEAKTPTPKKT 209
           DED+PPSI+ + PTP+KT
Sbjct: 370 DEDQPPSIDTRAPTPRKT 387


Top