BLASTX nr result
ID: Coptis24_contig00024747
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00024747 (656 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_006291790.1| orf28 gene product (mitochondrion) [Daucus c... 66 1e-11 >ref|YP_006291790.1| orf28 gene product (mitochondrion) [Daucus carota subsp. sativus] gi|374081974|gb|AEY81166.1| orf28 (mitochondrion) [Daucus carota subsp. sativus] Length = 124 Score = 66.2 bits (160), Expect(2) = 1e-11 Identities = 38/64 (59%), Positives = 41/64 (64%) Frame = -2 Query: 358 NPARINNEAIQELLALLSSTRAMPSLAFGXXXXXXXXXXXSIGWR*GFPVVLVLIIYLIS 179 NPARINN+ + ELLALL R +P SIGWR GFPVVLVLIIYLIS Sbjct: 9 NPARINNDEVPELLALLELCRLLP----------LGRCPSSIGWRWGFPVVLVLIIYLIS 58 Query: 178 PARH 167 PARH Sbjct: 59 PARH 62 Score = 29.3 bits (64), Expect(2) = 1e-11 Identities = 13/15 (86%), Positives = 13/15 (86%) Frame = -3 Query: 171 GMS*LFRCELRFTRS 127 GM LFRCELRFTRS Sbjct: 63 GMPSLFRCELRFTRS 77