BLASTX nr result
ID: Coptis24_contig00024720
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00024720
(1408 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI24131.3| unnamed protein product [Vitis vinifera] 349 e-126
ref|XP_003540640.1| PREDICTED: general transcription factor 3C p... 313 e-110
ref|XP_003538968.1| PREDICTED: general transcription factor 3C p... 312 e-109
ref|XP_003607543.1| Transcription factor tau subunit sfc4 [Medic... 301 e-108
ref|XP_003607233.1| Transcription factor tau subunit sfc4 [Medic... 279 7e-99
>emb|CBI24131.3| unnamed protein product [Vitis vinifera]
Length = 915
Score = 349 bits (896), Expect(3) = e-126
Identities = 189/401 (47%), Positives = 246/401 (61%), Gaps = 48/401 (11%)
Frame = +1
Query: 4 MSFGHHQLALKYYFLLEGNSERVKGILHLKIAKCYLSLSERAQAISFYYK---------- 153
MS + ALKYY +LEGN R G LHLKIA+CYLSL ER QAI F+YK
Sbjct: 348 MSLELYDFALKYYLMLEGNVGRDNGFLHLKIAQCYLSLKERVQAIPFFYKENQEADRLAK 407
Query: 154 ------------------------------------ALSTMEHNIDARVTLASLLLEEGK 225
L ++ NIDAR+TLA+LLLE K
Sbjct: 408 RGASIPIKCSEDFFFSLGSPCKLMIVILFLVSIFFYTLDVLQDNIDARLTLATLLLEGAK 467
Query: 226 DDEAISLLSPPKHIESPIDTFVGQSKPWWVSGKIRVQLGQIYHVKGMLEEFVDVILPSVS 405
+DEAI LLSPPK++ES +D + +PWW++GK++++L IY KGM +EFVD I P V
Sbjct: 468 EDEAILLLSPPKNLESTVDPNSDEFQPWWLNGKVKLKLSHIYRSKGMSDEFVDAIFPLVR 527
Query: 406 EALSVESLNQKA--KPKKRLTTSILFERVKILGDHQIDSIFGGFRPLAAPSXXXXXXXXX 579
E+L VE+L QK + KKRL+ S+LFERVK+L DH D++F GFRP+A+ S
Sbjct: 528 ESLFVETLKQKVTVRVKKRLSKSVLFERVKVLDDHHSDNVFHGFRPMASTSDLSKASRAK 587
Query: 580 XXXXXXXXXXXXXXXXXXXXGLDWHSDDSDNESPQHAQKESPLPNLLKDNEHYQLIIDLC 759
G+DW+SD+SD+ESP+ +E PLPNLLKD EH+ LI+DLC
Sbjct: 588 KLLQKKATRKEERKAAAMAAGVDWYSDESDDESPEQKLREPPLPNLLKDEEHHHLILDLC 647
Query: 760 KALASLRRYWDALKIIQDTQRLALSTLSFEKKEELRSIEAQIAYNISDPTYACEDARSTV 939
KALASLR+YW+AL II T RLA + + EKKEELRS+ AQIAYNI+DP + + + V
Sbjct: 648 KALASLRKYWEALDIINLTLRLAYNIMPIEKKEELRSLGAQIAYNITDPKHGFDYVKYIV 707
Query: 940 KKHPNSISSWNYYYKVISRLESKLSRPSKFLIHMRRSPKMC 1062
++HP+S+++WN YYKVISRLE++ S+ SK L MR K C
Sbjct: 708 QQHPHSLAAWNCYYKVISRLENRYSKHSKLLHSMRVRHKDC 748
Score = 97.1 bits (240), Expect(3) = e-126
Identities = 46/52 (88%), Positives = 49/52 (94%)
Frame = +2
Query: 1253 AGTALINLALGFRLQNKHQCLAQGFAFLHNNLRLSDNSQEALYNIARAYQHV 1408
AGTALIN+ALGFRLQNKHQCLAQG AFL+NNLRL +NSQEALYNIARAY HV
Sbjct: 789 AGTALINIALGFRLQNKHQCLAQGLAFLYNNLRLCENSQEALYNIARAYHHV 840
Score = 55.1 bits (131), Expect(3) = e-126
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +3
Query: 1077 FPGKFTMISQHQSAARK*LEACKLQPDSPLINLCVGMRLVN 1199
F +FTMISQHQ AA++ LEA KL P++PLINLC G L+N
Sbjct: 755 FGHQFTMISQHQIAAKEYLEAYKLMPENPLINLCAGTALIN 795
>ref|XP_003540640.1| PREDICTED: general transcription factor 3C polypeptide 3-like
[Glycine max]
Length = 919
Score = 313 bits (802), Expect(3) = e-110
Identities = 171/351 (48%), Positives = 231/351 (65%), Gaps = 3/351 (0%)
Frame = +1
Query: 1 LMSFGHHQLALKYYFLLEGNSERVKGILHLKIAKCYLSLSERAQAISFYYKALSTMEHNI 180
LM H+ AL YY +LEGN E+ G+L+LKIA+CY+SL ER+QAI FY KAL T++ ++
Sbjct: 406 LMGLEHYNPALNYYLMLEGNIEKENGLLYLKIARCYMSLKERSQAILFYSKALETLQDDV 465
Query: 181 DARVTLASLLLEEGKDDEAISLLSPPKHI---ESPIDTFVGQSKPWWVSGKIRVQLGQIY 351
DAR+TLASLLLEE K+DEAISLLSPPK E+P + +S WW +I+++L IY
Sbjct: 466 DARITLASLLLEEAKEDEAISLLSPPKDSDFGEAPSE----KSNRWWADIRIKLKLCNIY 521
Query: 352 HVKGMLEEFVDVILPSVSEALSVESLNQKAKPKKRLTTSILFERVKILGDHQIDSIFGGF 531
+G L++FVD I P V E+L V +L QK K KKRL+ L ERV++L + D++F GF
Sbjct: 522 WNRGTLDDFVDTIFPLVRESLYVATLRQKGKSKKRLSKRDLVERVRVLDGPEKDNVFRGF 581
Query: 532 RPLAAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLDWHSDDSDNESPQHAQKESPLP 711
RP+AAPS G+DW + +E PL
Sbjct: 582 RPVAAPSDLLKASRAKKLLQKKAMEKEKRKAEALASGIDWLKN-----------REPPLC 630
Query: 712 NLLKDNEHYQLIIDLCKALASLRRYWDALKIIQDTQRLALSTLSFEKKEELRSIEAQIAY 891
NLLKD EH+QLIIDLCKALASL+RYW+AL+II + RLA ++LS EKKEELRS+ AQ+AY
Sbjct: 631 NLLKDEEHHQLIIDLCKALASLQRYWEALEIINLSLRLAHTSLSTEKKEELRSLGAQMAY 690
Query: 892 NISDPTYACEDARSTVKKHPNSISSWNYYYKVISRLESKLSRPSKFLIHMR 1044
N +DP + + + V++HP+ +++WN YYKVISRLE++ +R KF+ M+
Sbjct: 691 NTTDPKHGFDCVKYIVQQHPHGVAAWNCYYKVISRLENRDTRHYKFVRGMQ 741
Score = 83.2 bits (204), Expect(3) = e-110
Identities = 40/56 (71%), Positives = 47/56 (83%), Gaps = 5/56 (8%)
Frame = +2
Query: 1256 GTALINLALGFRLQNKHQCLAQGFAFLHNNLRLSDNS-----QEALYNIARAYQHV 1408
GTALINLALGFRLQNKHQC+ QG AFL+NN+R+ +NS QE+LYNIARA+ HV
Sbjct: 789 GTALINLALGFRLQNKHQCVVQGLAFLYNNMRICENSQVFFLQESLYNIARAFHHV 844
Score = 52.8 bits (125), Expect(3) = e-110
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +3
Query: 1086 KFTMISQHQSAARK*LEACKLQPDSPLINLCVGMRLVN 1199
+FT+ S HQ AARK LEA KL P++PL+NLCVG L+N
Sbjct: 757 QFTICSHHQDAARKYLEAYKLLPENPLVNLCVGTALIN 794
>ref|XP_003538968.1| PREDICTED: general transcription factor 3C polypeptide 3-like
[Glycine max]
Length = 929
Score = 312 bits (800), Expect(3) = e-109
Identities = 169/348 (48%), Positives = 229/348 (65%)
Frame = +1
Query: 1 LMSFGHHQLALKYYFLLEGNSERVKGILHLKIAKCYLSLSERAQAISFYYKALSTMEHNI 180
LM H+ AL YY +LEGN E+ G+L+LKIA+CY+SL ER+QAI FY KAL T++ ++
Sbjct: 415 LMGLEHYNPALNYYLMLEGNVEKENGLLYLKIARCYMSLKERSQAILFYSKALETLQDDV 474
Query: 181 DARVTLASLLLEEGKDDEAISLLSPPKHIESPIDTFVGQSKPWWVSGKIRVQLGQIYHVK 360
DAR+TLASLLLEEGK+DEAI LLSPPK + + G+S WW +I+++L IY +
Sbjct: 475 DARITLASLLLEEGKEDEAIFLLSPPKDSDFG-EAPSGKSNRWWFDIRIKLKLCNIYWNR 533
Query: 361 GMLEEFVDVILPSVSEALSVESLNQKAKPKKRLTTSILFERVKILGDHQIDSIFGGFRPL 540
G L++FVD I P + E+L V + QK K KKRL+ L ERV++L + D++F GFRP+
Sbjct: 534 GTLDDFVDTIFPLIRESLYVATCRQKGKSKKRLSKRDLVERVRVLDGPEKDNVFRGFRPV 593
Query: 541 AAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLDWHSDDSDNESPQHAQKESPLPNLL 720
AAPS G+DW + +E PL NLL
Sbjct: 594 AAPSDLLKASRAKKLLQKKAIEKEKRKAEALASGIDWLKN-----------REPPLCNLL 642
Query: 721 KDNEHYQLIIDLCKALASLRRYWDALKIIQDTQRLALSTLSFEKKEELRSIEAQIAYNIS 900
KD EH+QLIIDLCKALASL+RYW+AL+II RLA ++LS EKKEELRS+ AQ+AYN +
Sbjct: 643 KDEEHHQLIIDLCKALASLQRYWEALEIINLFLRLAHTSLSTEKKEELRSLGAQMAYNTT 702
Query: 901 DPTYACEDARSTVKKHPNSISSWNYYYKVISRLESKLSRPSKFLIHMR 1044
DP + + + V++HP+S+++WN YYKVISRLE++ +R KF+ M+
Sbjct: 703 DPKHGFDCVKYIVQQHPHSVAAWNCYYKVISRLENRDTRHYKFVRGMQ 750
Score = 81.3 bits (199), Expect(3) = e-109
Identities = 40/57 (70%), Positives = 46/57 (80%), Gaps = 6/57 (10%)
Frame = +2
Query: 1256 GTALINLALGFRLQNKHQCLAQGFAFLHNNLRLSDNS------QEALYNIARAYQHV 1408
GTALINLALG RLQNKHQC+ QG AFL+NNLR+ +NS QE+LYNIARA+ HV
Sbjct: 798 GTALINLALGLRLQNKHQCVVQGLAFLYNNLRICENSQQLIFLQESLYNIARAFHHV 854
Score = 52.8 bits (125), Expect(3) = e-109
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +3
Query: 1086 KFTMISQHQSAARK*LEACKLQPDSPLINLCVGMRLVN 1199
+FT+ S HQ AARK LEA KL P++PL+NLCVG L+N
Sbjct: 766 QFTICSHHQDAARKYLEAYKLLPENPLVNLCVGTALIN 803
>ref|XP_003607543.1| Transcription factor tau subunit sfc4 [Medicago truncatula]
gi|355508598|gb|AES89740.1| Transcription factor tau
subunit sfc4 [Medicago truncatula]
Length = 937
Score = 301 bits (770), Expect(3) = e-108
Identities = 162/348 (46%), Positives = 230/348 (66%)
Frame = +1
Query: 1 LMSFGHHQLALKYYFLLEGNSERVKGILHLKIAKCYLSLSERAQAISFYYKALSTMEHNI 180
LM GH+ AL Y+ +LEGNS+ G L+LKIA+CY SL ER QAI +YKAL T++ ++
Sbjct: 419 LMGLGHYNSALNYFKMLEGNSKNENGFLYLKIARCYRSLEERKQAIISFYKALETLQDDV 478
Query: 181 DARVTLASLLLEEGKDDEAISLLSPPKHIESPIDTFVGQSKPWWVSGKIRVQLGQIYHVK 360
+ARV LASLL+EEGK++EAISLLSPPK +S + +S WWV +I+++L I+ ++
Sbjct: 479 EARVALASLLVEEGKENEAISLLSPPKDSDSG-EAHSEKSNRWWVDVRIKLKLCNIFQIR 537
Query: 361 GMLEEFVDVILPSVSEALSVESLNQKAKPKKRLTTSILFERVKILGDHQIDSIFGGFRPL 540
GML +FV+V LP V E+L V + +K + K+RL+ L +RV++L + +S+F GFRP+
Sbjct: 538 GMLNDFVNVSLPLVHESLHVPAPRRKGQSKRRLSIRDLEKRVRVLNVPETNSVFRGFRPI 597
Query: 541 AAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLDWHSDDSDNESPQHAQKESPLPNLL 720
+ S G+DW SDDSD+E PQ +SPL NL
Sbjct: 598 TSSSDLSKASRAKKLLLKKAIEKERKKAEAVASGIDWLSDDSDDE-PQEPNTDSPLCNLH 656
Query: 721 KDNEHYQLIIDLCKALASLRRYWDALKIIQDTQRLALSTLSFEKKEELRSIEAQIAYNIS 900
KD ++QLIIDLC ALASL+RY +AL+II T RLA ++LS EK E+LRS+E Q+AYN +
Sbjct: 657 KDEGYHQLIIDLCNALASLQRYSEALEIINLTLRLAHTSLSTEKNEKLRSLEVQMAYNTT 716
Query: 901 DPTYACEDARSTVKKHPNSISSWNYYYKVISRLESKLSRPSKFLIHMR 1044
DP + + V++H +S+++WN YYKV+SRLE++ +R KFL M+
Sbjct: 717 DPKQGFDCVKDMVQQHAHSVAAWNCYYKVVSRLENRDTRHDKFLRSMQ 764
Score = 86.7 bits (213), Expect(3) = e-108
Identities = 39/51 (76%), Positives = 44/51 (86%)
Frame = +2
Query: 1256 GTALINLALGFRLQNKHQCLAQGFAFLHNNLRLSDNSQEALYNIARAYQHV 1408
GTAL+NLALGFRL NKHQC+ QG AFL+NNL + NSQE+LYNIARAY HV
Sbjct: 812 GTALVNLALGFRLHNKHQCIVQGLAFLYNNLEICTNSQESLYNIARAYHHV 862
Score = 53.5 bits (127), Expect(3) = e-108
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +3
Query: 1086 KFTMISQHQSAARK*LEACKLQPDSPLINLCVGMRLVN 1199
+FT+ S HQ AARK LEA KL P++PL+NLCVG LVN
Sbjct: 780 QFTLCSHHQDAARKYLEAYKLLPENPLVNLCVGTALVN 817
>ref|XP_003607233.1| Transcription factor tau subunit sfc4 [Medicago truncatula]
gi|355508288|gb|AES89430.1| Transcription factor tau
subunit sfc4 [Medicago truncatula]
Length = 958
Score = 279 bits (713), Expect(3) = 7e-99
Identities = 160/357 (44%), Positives = 225/357 (63%), Gaps = 10/357 (2%)
Frame = +1
Query: 4 MSFGHHQLALKYYFLLEGNSERVKGILHLKIAKCYLSLSERAQAISFYYKALSTMEHNID 183
M GH+ AL Y+ +LEGNS+ G+L+LKIA+CY +L ER QAI +Y L T++ +++
Sbjct: 420 MGLGHYNSALNYFKMLEGNSKNEDGLLYLKIARCYQALGERKQAIISFYIVLETLQDDVE 479
Query: 184 ARVTLASLLLEEGKDDEAISLLSPPKHIESPIDTFVGQS-KP--WWVSGKIRVQLGQIYH 354
AR+TLASLL+EEGK++EAISLLSPPK +S D+ S KP WW+ +I+++L I+
Sbjct: 480 ARITLASLLVEEGKENEAISLLSPPK--DSGTDSGEAHSEKPNRWWIDVRIKLKLCNIFQ 537
Query: 355 VKGMLEEFVDVILPSVSEALSVESLNQKAK-------PKKRLTTSILFERVKILGDHQID 513
++GML +FVDV P V E+L+V + +K K KKRL+TS L +RV+ L + D
Sbjct: 538 IRGMLTDFVDVCFPLVRESLNVATPKRKGKLLLPGKSKKKRLSTSDLLKRVEKLAAPETD 597
Query: 514 SIFGGFRPLAAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLDWHSDDSDNESPQHAQ 693
S+F GF+ +A S G+DW SDDSD+E Q
Sbjct: 598 SVFRGFKAVATSSDRLKASRAKKALEEKAIEKEKRKAEAAASGIDWRSDDSDDEL-QKPN 656
Query: 694 KESPLPNLLKDNEHYQLIIDLCKALASLRRYWDALKIIQDTQRLALSTLSFEKKEELRSI 873
ESPL NL KD ++QL+IDLC ALASL+ Y +AL+II + +LA +LS EK E+LRS+
Sbjct: 657 TESPLCNLHKDEGYHQLLIDLCNALASLQMYREALEIINLSLKLAHISLSAEKNEKLRSL 716
Query: 874 EAQIAYNISDPTYACEDARSTVKKHPNSISSWNYYYKVISRLESKLSRPSKFLIHMR 1044
Q+AY+ DP + + VK+H S+++WN YYKVISRLE++ +R KFL M+
Sbjct: 717 GVQMAYSTPDPKQGFDCVKGIVKQHAQSVAAWNCYYKVISRLENRDTRHDKFLRDMQ 773
Score = 79.7 bits (195), Expect(3) = 7e-99
Identities = 41/63 (65%), Positives = 45/63 (71%), Gaps = 12/63 (19%)
Frame = +2
Query: 1256 GTALINLALGFRLQNKHQCLAQGFAFLHNNLRLSDNS------------QEALYNIARAY 1399
GTALINLALGFRLQNKHQC+ QG AFL+NNL + NS QE+LYNIARAY
Sbjct: 821 GTALINLALGFRLQNKHQCVVQGLAFLYNNLEICKNSQESTELIDCPALQESLYNIARAY 880
Query: 1400 QHV 1408
HV
Sbjct: 881 HHV 883
Score = 52.0 bits (123), Expect(3) = 7e-99
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +3
Query: 1086 KFTMISQHQSAARK*LEACKLQPDSPLINLCVGMRLVN 1199
+FT+ S HQ AARK LEA KL P +PL+NLCVG L+N
Sbjct: 789 QFTLCSHHQDAARKYLEAYKLLPKNPLVNLCVGTALIN 826