BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024714
         (544 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511057.1| pentatricopeptide repeat-containing protein,...   191   8e-47
ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containi...   187   1e-45
emb|CBI29768.3| unnamed protein product [Vitis vinifera]              150   2e-34
ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containi...   131   8e-29
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...   130   1e-28

>ref|XP_002511057.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550172|gb|EEF51659.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 543

 Score =  191 bits (484), Expect = 8e-47
 Identities = 98/182 (53%), Positives = 126/182 (69%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   IRAYANNHHPTQTLQLYLLMRRNCVGPNNYTFPFVLKACGSRSVA-EGRSVHSDVIRTGF 177
           IRAYAN     +TL+LY+LMRR  V  NNYTFPF+ KAC S S+  +G+  H D ++  F
Sbjct: 112 IRAYANAGLCFETLELYMLMRRAGVSSNNYTFPFIFKACASNSLLLQGKVAHGDAVKADF 171

Query: 178 DSHVFVQAALVDMYAKCGQTDDARWVFDGLPVRDLVCWTAMITAYEQSDRPEEALMLFHA 357
           DS V+V+AALVDMYAKCGQ  D R +FD +PV+DLVCWTAMITAYEQ ++P+EAL+L   
Sbjct: 172 DSDVYVKAALVDMYAKCGQFCDGRKIFDEMPVKDLVCWTAMITAYEQGEKPDEALILLRK 231

Query: 358 MQAKEKFXXXXXXXXXXXXXXXQLGDARMARSVHAYATRNNFVQDVFVDNSIVAMYAKSG 537
           MQ    F               QL DA+ A+SVHAYA R +F++++FV NSI+AM+ K G
Sbjct: 232 MQQHGLF-PDEVTMVSVASAIGQLWDAKWAQSVHAYAIRRSFLKEIFVANSILAMHTKCG 290

Query: 538 NL 543
           N+
Sbjct: 291 NM 292



 Score = 75.5 bits (184), Expect = 5e-12
 Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   IRAYANNHHPTQTLQLYLLMRRNCVGPNNYTFPFVLKACGSRSVAE-GRSVHSDVIRTGF 177
           I AY     P + L L   M+++ + P+  T   V  A G    A+  +SVH+  IR  F
Sbjct: 213 ITAYEQGEKPDEALILLRKMQQHGLFPDEVTMVSVASAIGQLWDAKWAQSVHAYAIRRSF 272

Query: 178 DSHVFVQAALVDMYAKCGQTDDARWVFDGLPVRDLVCWTAMITAYEQSDRPEEALMLFHA 357
              +FV  +++ M+ KCG  + +  +FD +  R+++ W +M++ Y Q+ +  EAL LF  
Sbjct: 273 LKEIFVANSILAMHTKCGNMEKSCLIFDMMDERNVISWNSMLSGYTQNGQASEALFLFDK 332

Query: 358 MQAKEKFXXXXXXXXXXXXXXXQLGDARMARSVHAYATRNNFVQDVFVDNSIVAMYAKSG 537
           M+                     LG   +    H +   +    D+ + N+++ MYAK G
Sbjct: 333 MR-DSGCEPNSVTALIMVAACAYLGSRHLGGKFHDFILDSKMKIDMNLRNALMDMYAKCG 391

Query: 538 NL 543
           +L
Sbjct: 392 DL 393


>ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  187 bits (474), Expect = 1e-45
 Identities = 100/182 (54%), Positives = 120/182 (65%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   IRAYANNHHPTQTLQLYLLMRRNCVGPNNYTFPFVLKACGSRSVAE-GRSVHSDVIRTGF 177
           +RAYAN     + + LY+ M+R  VG NN+T+PFVLK C S   A  G  VH  V+RTGF
Sbjct: 104 LRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGF 163

Query: 178 DSHVFVQAALVDMYAKCGQTDDARWVFDGLPVRDLVCWTAMITAYEQSDRPEEALMLFHA 357
            S +FV+AALVDMYAKCG+  DA  VFD + +RD+VCWTAMIT YEQ++RP +ALMLF  
Sbjct: 164 GSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRK 223

Query: 358 MQAKEKFXXXXXXXXXXXXXXXQLGDARMARSVHAYATRNNFVQDVFVDNSIVAMYAKSG 537
           MQ +E F               QLGD RMA SVH YA  N F+ DV V NSIV MYAK G
Sbjct: 224 MQ-EEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCG 282

Query: 538 NL 543
           N+
Sbjct: 283 NV 284



 Score = 85.9 bits (211), Expect = 4e-15
 Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
 Frame = +1

Query: 1   IRAYANNHHPTQTLQLYLLMRRNCVGPNNYTFPFVLKACGSRSVAEGR---SVHSDVIRT 171
           I  Y     P + L L+  M+      +  T   V  A G   + +GR   SVH   +  
Sbjct: 205 ITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQ--LGDGRMAISVHGYAVLN 262

Query: 172 GFDSHVFVQAALVDMYAKCGQTDDARWVFDGLPVRDLVCWTAMITAYEQSDRPEEALMLF 351
           GF   V V  ++V MYAKCG  + AR VFD +  R+ + W +M++ Y Q+ RP +AL LF
Sbjct: 263 GFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLF 322

Query: 352 HAMQAKEKFXXXXXXXXXXXXXXXQLGDARMARSVHAYATRNNFVQDVFVDNSIVAMYAK 531
           + MQA E                  LG   + R +H +   +    D  + N+I+ MY K
Sbjct: 323 NQMQASE-CDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMK 381

Query: 532 SGNL 543
            G+L
Sbjct: 382 CGDL 385



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
 Frame = +1

Query: 1   IRAYANNHHPTQTLQLYLLMRRNCVGPNNYTFPFVLKAC---GSRSVAEGRSVHSDVIRT 171
           +  Y  N  PT  L L+  M+ +   PN  T   ++ AC   GS+ +  GR +H+ VI +
Sbjct: 306 LSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHL--GRKLHNFVISS 363

Query: 172 GFDSHVFVQAALVDMYAKCGQTDDARWVFDG--LPVRDLVCWTAMITAYEQSDRPEEALM 345
             D    ++ A++DMY KCG  D A  +F+   L  RD+  W  +I+ Y      +EAL 
Sbjct: 364 KMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALE 423

Query: 346 LFHAMQAK 369
           LF  MQ +
Sbjct: 424 LFSRMQVE 431


>emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  150 bits (378), Expect = 2e-34
 Identities = 81/152 (53%), Positives = 99/152 (65%), Gaps = 1/152 (0%)
 Frame = +1

Query: 1   IRAYANNHHPTQTLQLYLLMRRNCVGPNNYTFPFVLKACGSRSVAE-GRSVHSDVIRTGF 177
           +RAYAN     + + LY+ M+R  VG NN+T+PFVLK C S   A  G  VH  V+RTGF
Sbjct: 104 LRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGF 163

Query: 178 DSHVFVQAALVDMYAKCGQTDDARWVFDGLPVRDLVCWTAMITAYEQSDRPEEALMLFHA 357
            S +FV+AALVDMYAKCG+  DA  VFD + +RD+VCWTAMIT YEQ++RP +ALMLF  
Sbjct: 164 GSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRK 223

Query: 358 MQAKEKFXXXXXXXXXXXXXXXQLGDARMARS 453
           MQ +E F               QLGD RMA S
Sbjct: 224 MQ-EEGFLGDEITAISVASAVGQLGDGRMAIS 254



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
 Frame = +1

Query: 1   IRAYANNHHPTQTLQLYLLMRRNCVGPNNYTFPFVLKAC---GSRSVAEGRSVHSDVIRT 171
           +  Y  N  PT  L L+  M+ +   PN  T   ++ AC   GS+ +  GR +H+ VI +
Sbjct: 275 LSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHL--GRKLHNFVISS 332

Query: 172 GFDSHVFVQAALVDMYAKCGQTDDARWVFDG--LPVRDLVCWTAMITAYEQSDRPEEALM 345
             D    ++ A++DMY KCG  D A  +F+   L  RD+  W  +I+ Y      +EAL 
Sbjct: 333 KMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALE 392

Query: 346 LFHAMQAK 369
           LF  MQ +
Sbjct: 393 LFSRMQVE 400



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/100 (32%), Positives = 49/100 (49%)
 Frame = +1

Query: 244 ARWVFDGLPVRDLVCWTAMITAYEQSDRPEEALMLFHAMQAKEKFXXXXXXXXXXXXXXX 423
           AR VFD +  R+ + W +M++ Y Q+ RP +AL LF+ MQA E                 
Sbjct: 256 ARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASE-CDPNPVTALIMVSACS 314

Query: 424 QLGDARMARSVHAYATRNNFVQDVFVDNSIVAMYAKSGNL 543
            LG   + R +H +   +    D  + N+I+ MY K G+L
Sbjct: 315 YLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDL 354


>ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  131 bits (329), Expect = 8e-29
 Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 3/183 (1%)
 Frame = +1

Query: 4   RAYANNHHPTQTLQLYLLMRRNCVGPNNYTFPFVLKACGSRSVA-EGRSVHSDVIRTGFD 180
           RAY+ +  P +T+ LY LM RN   P+NY+FPFVLKAC   S+  +GR +HS  ++ G  
Sbjct: 100 RAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVH 159

Query: 181 SHVFVQAALVDMYAKCGQTDDARWVFDGLP--VRDLVCWTAMITAYEQSDRPEEALMLFH 354
             VFVQ AL+  ++ CG  + AR VFD LP  VRD+V W +MI+ Y QS R E AL +F 
Sbjct: 160 LDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFW 219

Query: 355 AMQAKEKFXXXXXXXXXXXXXXXQLGDARMARSVHAYATRNNFVQDVFVDNSIVAMYAKS 534
            +                     +LG   + + +H   T + FV DVFV +S++ MY+K 
Sbjct: 220 ELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKC 279

Query: 535 GNL 543
           G +
Sbjct: 280 GQI 282



 Score =  108 bits (269), Expect = 7e-22
 Identities = 62/183 (33%), Positives = 93/183 (50%), Gaps = 2/183 (1%)
 Frame = +1

Query: 1   IRAYANNHHPTQTLQLYL-LMRRNCVGPNNYTFPFVLKACGSRSVAE-GRSVHSDVIRTG 174
           I  Y  +H     L+++  L+    + P+  T    L  CG   + + G+ +H     +G
Sbjct: 202 ISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSG 261

Query: 175 FDSHVFVQAALVDMYAKCGQTDDARWVFDGLPVRDLVCWTAMITAYEQSDRPEEALMLFH 354
           F   VFV ++L+DMY+KCGQ +DAR VFD +P R+ VCWT+MI  Y QSD  +EA+ LF 
Sbjct: 262 FVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFR 321

Query: 355 AMQAKEKFXXXXXXXXXXXXXXXQLGDARMARSVHAYATRNNFVQDVFVDNSIVAMYAKS 534
            MQ    F                 G     R +H Y  RN+   D+   N+++ MY+K 
Sbjct: 322 EMQI-GGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKC 380

Query: 535 GNL 543
           G++
Sbjct: 381 GDI 383



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
 Frame = +1

Query: 1   IRAYANNHHPTQTLQLYLLMRRNCVGPNNYTFPFVLKACGS-RSVAEGRSVHSDVIRTGF 177
           I  YA +    + ++L+  M+      +  T   VL ACG   ++A+GR +H    R   
Sbjct: 304 IAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSI 363

Query: 178 DSHVFVQAALVDMYAKCGQTDDARWVFDGLPVRDLVCWTAMITAYEQSDRPEEALMLFHA 357
           +  +  + AL+ MY+KCG    A  +F GL   D+  W+A+I+    +   ++AL LF  
Sbjct: 364 EMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQ 423

Query: 358 MQ 363
           M+
Sbjct: 424 ME 425


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  130 bits (328), Expect = 1e-28
 Identities = 73/182 (40%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
 Frame = +1

Query: 1   IRAYANNHHPTQTLQLYLLMRRNCVGPNNYTFPFVLKACGSRS-VAEGRSVHSDVIRTGF 177
           IR YA N      + LY  MR   + P+ +TFPFVLKAC + S + EG+ +H DVIR+G 
Sbjct: 74  IRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGL 133

Query: 178 DSHVFVQAALVDMYAKCGQTDDARWVFDGLPVRDLVCWTAMITAYEQSDRPEEALMLFHA 357
           +S VFV AAL+DMYAKCG  + AR VFD +  RD+VCW +M+  Y Q+ +P+E+L L   
Sbjct: 134 ESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRV 193

Query: 358 MQAKEKFXXXXXXXXXXXXXXXQLGDARMARSVHAYATRNNFVQDVFVDNSIVAMYAKSG 537
           M A                     G     + +H Y+ R+ F  +  V  +++ MYAKSG
Sbjct: 194 M-AFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSG 252

Query: 538 NL 543
           ++
Sbjct: 253 SV 254



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
 Frame = +1

Query: 1   IRAYANNHHPTQTLQLYLLMRRNCVGPNNYTFPFVLKACGSRSVA-EGRSVHSDVIRTGF 177
           +  Y+ N  P ++L L  +M  N + P   TF   + A     +  +G+ +H    R GF
Sbjct: 175 LATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGF 234

Query: 178 DSHVFVQAALVDMYAKCGQTDDARWVFDGLPVRDLVCWTAMITAYEQSDRPEEALMLFHA 357
           +S+  V+ AL+DMYAK G  + AR +F+ L  + +V W AMIT Y       EAL LF  
Sbjct: 235 ESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKE 294

Query: 358 MQAK 369
           M+ K
Sbjct: 295 MKGK 298