BLASTX nr result

ID: Coptis24_contig00024703 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024703
         (792 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546450.1| PREDICTED: uncharacterized protein LOC100778...    62   1e-07
ref|NP_001236809.1| uncharacterized protein LOC100527492 [Glycin...    61   2e-07
ref|XP_003595123.1| hypothetical protein MTR_2g038500 [Medicago ...    60   5e-07

>ref|XP_003546450.1| PREDICTED: uncharacterized protein LOC100778382 [Glycine max]
          Length = 119

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 45/109 (41%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
 Frame = +3

Query: 120 MGLEIPEEFWPITPLRTISLTRTKASPITPTKDNDNGSKVSD---LNSSINEEEDCHTPK 290
           MGLEI EEF PITP+RT+  T      +  T  +D G+  +    LN  +  EE+CHTP 
Sbjct: 1   MGLEILEEFRPITPIRTVVPT------VRTTLKHDLGTTTTTKEVLNEDVLIEEECHTPT 54

Query: 291 SKDQLLKT-PLVC-XXXXXXXXXXXXXSTSTVATQLFFHVPRDLNSVFV 431
           S  Q L T PLVC              +    + Q FF VP DL SVFV
Sbjct: 55  SPSQKLSTNPLVCPPAPKKPRVVPRRHNLDPPSQQGFFKVPHDLASVFV 103


>ref|NP_001236809.1| uncharacterized protein LOC100527492 [Glycine max]
           gi|255632472|gb|ACU16586.1| unknown [Glycine max]
          Length = 121

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 44/111 (39%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
 Frame = +3

Query: 120 MGLEIPEEFWPITPLRTISLTRTKASPITPTKDNDNGSKVSDLNSSINE----EEDCHTP 287
           MGLEI EEF PITP+RT+  T      +  T  +D G+  +     +NE    EE+CHTP
Sbjct: 1   MGLEILEEFRPITPIRTVVPT------VRTTLKHDLGTTTTTTKEVLNEDVVIEEECHTP 54

Query: 288 KSKDQLLKT-PLVC--XXXXXXXXXXXXXSTSTVATQLFFHVPRDLNSVFV 431
            S  Q L T PLVC               +    + + FF VP DL SVFV
Sbjct: 55  TSPSQKLPTNPLVCPPAPKKPRVVPRRLKNLDPPSQEGFFQVPHDLASVFV 105


>ref|XP_003595123.1| hypothetical protein MTR_2g038500 [Medicago truncatula]
           gi|355484171|gb|AES65374.1| hypothetical protein
           MTR_2g038500 [Medicago truncatula]
          Length = 112

 Score = 60.1 bits (144), Expect = 5e-07
 Identities = 42/106 (39%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
 Frame = +3

Query: 120 MGLEIPEEFWPITPLRTISLTRTKASPITPTKDNDNGSKVSDLNSSINE-EEDCHTP-KS 293
           MGLE+ EEF PITP+RTI+       P+T T  +   S+V      + E E++CHTP  S
Sbjct: 1   MGLEMLEEFLPITPIRTIA-------PMTKTLKHV--SEVETTKKVLRENEQECHTPTSS 51

Query: 294 KDQLLKTPLVCXXXXXXXXXXXXXSTSTVATQLFFHVPRDLNSVFV 431
           + Q     LVC               S + +Q+FF VP DL SVFV
Sbjct: 52  RGQSSHNFLVCPPAPKKSRVTQRNKNSALPSQVFFQVPHDLASVFV 97


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