BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024687
         (733 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat...   385   e-105
emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]   385   e-105
gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]        347   1e-93
ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   345   7e-93
ref|XP_003630975.1| Pentatricopeptide repeat-containing protein ...   341   8e-92

>ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  385 bits (990), Expect = e-105
 Identities = 183/244 (75%), Positives = 216/244 (88%)
 Frame = +2

Query: 2    RSARSVFNRMGSSDMVSWTAMIMGYALHGHAQDALHLFQQMEVVGVRPNYVAFVAILTAC 181
            R+AR +F++M   DMVSWTAMIMGYALHGHA DA+ LF++MEV GV+PNYVAF+A+LTAC
Sbjct: 389  RTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTAC 448

Query: 182  SHAGLIDEAQKLFNSMIQDYAISPGLEHYAAVADLLGRAGRLEEAYKFISSMHIEPTGSV 361
            SHAGL+DEA K FNSM QDY I PGLEHYAAVADLLGR GRLEEAY+FIS MHIEPTGSV
Sbjct: 449  SHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSV 508

Query: 362  WLALLSSCRVHKNTELAEKVAENIFKVDPENMGVYVLMSNVYSAAFRWKDAASMRVAMKY 541
            W  LL++CRVHKN ELAEKV++ +F VDP+N+G YVL+SN+YSAA RWKDA  +R+AM+ 
Sbjct: 509  WSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRD 568

Query: 542  KGMRKKPACSWIEVKGEVHAFVSGDKSHPDYDRIHKALEVLLEQMEREGYVPNTEDVLHD 721
            KGM+KKPACSWIE+K +VHAFV+GDKSHP YDRI++AL+VLLEQMEREGYV +T +VLHD
Sbjct: 569  KGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHD 628

Query: 722  VEEE 733
            VEEE
Sbjct: 629  VEEE 632



 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 32/126 (25%), Positives = 61/126 (48%)
 Frame = +2

Query: 17  VFNRMGSSDMVSWTAMIMGYALHGHAQDALHLFQQMEVVGVRPNYVAFVAILTACSHAGL 196
           VF  +   D +SW ++I G   +G   + L  FQQM +  ++PN+V+F +I+ AC+H   
Sbjct: 293 VFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTT 352

Query: 197 IDEAQKLFNSMIQDYAISPGLEHYAAVADLLGRAGRLEEAYKFISSMHIEPTGSVWLALL 376
           +   ++L   +I+       +   +A+ D+  + G +  A      M +    S W A++
Sbjct: 353 LHLGKQLHGYIIRS-RFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVS-WTAMI 410

Query: 377 SSCRVH 394
               +H
Sbjct: 411 MGYALH 416


>emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  385 bits (990), Expect = e-105
 Identities = 183/244 (75%), Positives = 216/244 (88%)
 Frame = +2

Query: 2    RSARSVFNRMGSSDMVSWTAMIMGYALHGHAQDALHLFQQMEVVGVRPNYVAFVAILTAC 181
            R+AR +F++M   DMVSWTAMIMGYALHGHA DA+ LF++MEV GV+PNYVAF+A+LTAC
Sbjct: 349  RTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTAC 408

Query: 182  SHAGLIDEAQKLFNSMIQDYAISPGLEHYAAVADLLGRAGRLEEAYKFISSMHIEPTGSV 361
            SHAGL+DEA K FNSM QDY I PGLEHYAAVADLLGR GRLEEAY+FIS MHIEPTGSV
Sbjct: 409  SHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSV 468

Query: 362  WLALLSSCRVHKNTELAEKVAENIFKVDPENMGVYVLMSNVYSAAFRWKDAASMRVAMKY 541
            W  LL++CRVHKN ELAEKV++ +F VDP+N+G YVL+SN+YSAA RWKDA  +R+AM+ 
Sbjct: 469  WSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRD 528

Query: 542  KGMRKKPACSWIEVKGEVHAFVSGDKSHPDYDRIHKALEVLLEQMEREGYVPNTEDVLHD 721
            KGM+KKPACSWIE+K +VHAFV+GDKSHP YDRI++AL+VLLEQMEREGYV +T +VLHD
Sbjct: 529  KGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHD 588

Query: 722  VEEE 733
            VEEE
Sbjct: 589  VEEE 592



 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 32/126 (25%), Positives = 61/126 (48%)
 Frame = +2

Query: 17  VFNRMGSSDMVSWTAMIMGYALHGHAQDALHLFQQMEVVGVRPNYVAFVAILTACSHAGL 196
           VF  +   D +SW ++I G   +G   + L  FQQM +  ++PN+V+F +I+ AC+H   
Sbjct: 253 VFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTT 312

Query: 197 IDEAQKLFNSMIQDYAISPGLEHYAAVADLLGRAGRLEEAYKFISSMHIEPTGSVWLALL 376
           +   ++L   +I+       +   +A+ D+  + G +  A      M +    S W A++
Sbjct: 313 LHLGKQLHGYIIRS-RFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVS-WTAMI 370

Query: 377 SSCRVH 394
               +H
Sbjct: 371 MGYALH 376


>gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  347 bits (890), Expect = 1e-93
 Identities = 161/244 (65%), Positives = 203/244 (83%)
 Frame = +2

Query: 2    RSARSVFNRMGSSDMVSWTAMIMGYALHGHAQDALHLFQQMEVVGVRPNYVAFVAILTAC 181
            R+AR +F+RM   DMVSWTAMIMG ALHGHA DA+ LF+QM+  G+ PNYVAF+A+LTAC
Sbjct: 453  RTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTAC 512

Query: 182  SHAGLIDEAQKLFNSMIQDYAISPGLEHYAAVADLLGRAGRLEEAYKFISSMHIEPTGSV 361
            SHAGL+DEA K FNSM  D+ I+PG+EHYAAV+DLLGRAGRLEEAY FI  M I PTGSV
Sbjct: 513  SHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSV 572

Query: 362  WLALLSSCRVHKNTELAEKVAENIFKVDPENMGVYVLMSNVYSAAFRWKDAASMRVAMKY 541
            W  LLS+CRVHKN ++AEKVA  I +VDP+N G Y+L++N+YSAA RWK+AA  R +++ 
Sbjct: 573  WATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRR 632

Query: 542  KGMRKKPACSWIEVKGEVHAFVSGDKSHPDYDRIHKALEVLLEQMEREGYVPNTEDVLHD 721
             G+RK PACSWIEV+ +V+AF++GD+SHP Y++I +A+EVL+E ME+EGYVP+T +V HD
Sbjct: 633  TGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEKEGYVPDTSEVHHD 692

Query: 722  VEEE 733
            VEEE
Sbjct: 693  VEEE 696


>ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330-like [Cucumis
            sativus]
          Length = 712

 Score =  345 bits (884), Expect = 7e-93
 Identities = 159/244 (65%), Positives = 202/244 (82%)
 Frame = +2

Query: 2    RSARSVFNRMGSSDMVSWTAMIMGYALHGHAQDALHLFQQMEVVGVRPNYVAFVAILTAC 181
            R+A+ +F+RM   DMVSWTAMIMG ALHG A DA+ LF+QME  G++PN+VAF+A+LTAC
Sbjct: 392  RTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTAC 451

Query: 182  SHAGLIDEAQKLFNSMIQDYAISPGLEHYAAVADLLGRAGRLEEAYKFISSMHIEPTGSV 361
            SH GL+DEA K FNSM +D+ I+PG+EHYAAV+DLLGRAGRLEEAY FI  MHI PTGS+
Sbjct: 452  SHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSI 511

Query: 362  WLALLSSCRVHKNTELAEKVAENIFKVDPENMGVYVLMSNVYSAAFRWKDAASMRVAMKY 541
            W  LLS+CRVH N ++AEKVA  I +VDP N G Y+L++N+YSAA RWK+AA  R +M+ 
Sbjct: 512  WATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRR 571

Query: 542  KGMRKKPACSWIEVKGEVHAFVSGDKSHPDYDRIHKALEVLLEQMEREGYVPNTEDVLHD 721
             G+RK PACSWIEVK +V+AF++GD+SHP Y++I +A+EVL+E ME+EGYVP+T +V HD
Sbjct: 572  IGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHD 631

Query: 722  VEEE 733
            VEEE
Sbjct: 632  VEEE 635


>ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355524997|gb|AET05451.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  341 bits (875), Expect = 8e-92
 Identities = 164/245 (66%), Positives = 202/245 (82%), Gaps = 1/245 (0%)
 Frame = +2

Query: 2    RSARSVFNRMGSSDMVSWTAMIMGYALHGHAQDALHLFQQMEVVGVRPNYVAFVAILTAC 181
            + AR VF+R+   DMV+WTA+IMG A+HGHA DA+ LF+ M   GVRP YVAF+A+LTAC
Sbjct: 380  KMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTAC 439

Query: 182  SHAGLIDEAQKLFNSMIQDYAISPGLEHYAAVADLLGRAGRLEEAYKFISSMH-IEPTGS 358
            SHAGL+DE  + FNSM +D+ I+PGLEHYAAVADLLGRAGRLEEAY FIS+M  ++PTGS
Sbjct: 440  SHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGS 499

Query: 359  VWLALLSSCRVHKNTELAEKVAENIFKVDPENMGVYVLMSNVYSAAFRWKDAASMRVAMK 538
            VW  LL++CR HK+ ELAEKV + +  VD ENMG YVLMSN+YSAA RWKDAA +R+ M+
Sbjct: 500  VWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMR 559

Query: 539  YKGMRKKPACSWIEVKGEVHAFVSGDKSHPDYDRIHKALEVLLEQMEREGYVPNTEDVLH 718
             KG++K PACSWIEV  +VH F++GDKSHP YD+I+KAL+VLLEQME+EGYV +T  VLH
Sbjct: 560  KKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLH 619

Query: 719  DVEEE 733
            DV+EE
Sbjct: 620  DVDEE 624