BLASTX nr result
ID: Coptis24_contig00024678
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00024678 (232 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003522980.1| PREDICTED: RNA-binding protein 24-like [Glyc... 74 9e-12 ref|XP_002510728.1| RNA binding protein, putative [Ricinus commu... 74 2e-11 ref|XP_003527630.1| PREDICTED: 40S ribosomal protein S19, mitoch... 73 3e-11 gb|AAF16655.1|AC012394_4 putative RNA-binding protein; 16955-184... 72 4e-11 ref|NP_565132.2| RNA recognition motif-containing protein [Arabi... 72 4e-11 >ref|XP_003522980.1| PREDICTED: RNA-binding protein 24-like [Glycine max] Length = 286 Score = 74.3 bits (181), Expect = 9e-12 Identities = 34/44 (77%), Positives = 36/44 (81%) Frame = +1 Query: 1 VTFRDPEAAKRACLDQSPVIHGR*ANCNLASFGRPRPPPPYDNL 132 VTFRDPEAA+RAC D SPVI GR ANCNLAS GRPRPP PY + Sbjct: 78 VTFRDPEAARRACADPSPVIDGRRANCNLASLGRPRPPLPYGRI 121 >ref|XP_002510728.1| RNA binding protein, putative [Ricinus communis] gi|223551429|gb|EEF52915.1| RNA binding protein, putative [Ricinus communis] Length = 325 Score = 73.6 bits (179), Expect = 2e-11 Identities = 33/44 (75%), Positives = 36/44 (81%) Frame = +1 Query: 1 VTFRDPEAAKRACLDQSPVIHGR*ANCNLASFGRPRPPPPYDNL 132 VTFR+PEAAKRAC D +P+I GR ANCNLAS GRPRPP PY L Sbjct: 55 VTFREPEAAKRACADPTPIIDGRRANCNLASLGRPRPPMPYGRL 98 >ref|XP_003527630.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like [Glycine max] Length = 293 Score = 72.8 bits (177), Expect = 3e-11 Identities = 33/41 (80%), Positives = 35/41 (85%) Frame = +1 Query: 1 VTFRDPEAAKRACLDQSPVIHGR*ANCNLASFGRPRPPPPY 123 VTFRDPEAA+RAC D +PVI GR ANCNLAS GRPRPP PY Sbjct: 78 VTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPY 118 >gb|AAF16655.1|AC012394_4 putative RNA-binding protein; 16955-18423 [Arabidopsis thaliana] gi|12323977|gb|AAG51948.1|AC015450_9 putative RNA-binding protein; 24808-23340 [Arabidopsis thaliana] Length = 279 Score = 72.4 bits (176), Expect = 4e-11 Identities = 32/41 (78%), Positives = 35/41 (85%) Frame = +1 Query: 1 VTFRDPEAAKRACLDQSPVIHGR*ANCNLASFGRPRPPPPY 123 VTFRDPEAA+RAC D +P+I GR ANCNLAS GRPRPP PY Sbjct: 70 VTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPY 110 >ref|NP_565132.2| RNA recognition motif-containing protein [Arabidopsis thaliana] gi|332197724|gb|AEE35845.1| RNA recognition motif-containing protein [Arabidopsis thaliana] Length = 285 Score = 72.4 bits (176), Expect = 4e-11 Identities = 32/41 (78%), Positives = 35/41 (85%) Frame = +1 Query: 1 VTFRDPEAAKRACLDQSPVIHGR*ANCNLASFGRPRPPPPY 123 VTFRDPEAA+RAC D +P+I GR ANCNLAS GRPRPP PY Sbjct: 70 VTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPY 110