BLASTX nr result
ID: Coptis24_contig00024649
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00024649
(504 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera] 156 1e-41
ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containi... 156 1e-41
emb|CBI35164.3| unnamed protein product [Vitis vinifera] 156 1e-41
ref|XP_002319650.1| predicted protein [Populus trichocarpa] gi|2... 147 2e-40
ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containi... 147 1e-34
>emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 156 bits (394), Expect(2) = 1e-41
Identities = 74/124 (59%), Positives = 92/124 (74%)
Frame = +1
Query: 55 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 234
DI+ A +F ++ RDICMWNA++ G AMHG GEEAL++F ++E+ G+KPNDITFIG+LH
Sbjct: 449 DINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLH 508
Query: 235 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDMAHEXXXXXXXXXXX 414
ACSHA LVT+G LF M H FG+VP++EHYG MVDLLGRAGL+D AHE
Sbjct: 509 ACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 568
Query: 415 XVWG 426
VWG
Sbjct: 569 IVWG 572
Score = 38.5 bits (88), Expect(2) = 1e-41
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +3
Query: 423 GALLAVYKLHKNMRLGEVAAKQLLEME 503
GAL+A +LHKN +LGE+AA QLLE+E
Sbjct: 572 GALVAACRLHKNPQLGELAATQLLEIE 598
Score = 55.1 bits (131), Expect(2) = 1e-06
Identities = 32/106 (30%), Positives = 53/106 (50%)
Frame = +1
Query: 55 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 234
DI AR +F+ + RD+ +W AML A C ++A LF Q+ +G++P +T + +L
Sbjct: 348 DIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 407
Query: 235 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDM 372
C+ A + G + H + +VE VD + L+DM
Sbjct: 408 LCAVAGALDLGKWV-----HSYIDKERVE-----VDCILNTALVDM 443
Score = 22.3 bits (46), Expect(2) = 1e-06
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 24 LVDMYAKCGD 53
LVDMY KC D
Sbjct: 339 LVDMYGKCSD 348
>ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 156 bits (394), Expect(2) = 1e-41
Identities = 74/124 (59%), Positives = 92/124 (74%)
Frame = +1
Query: 55 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 234
DI+ A +F ++ RDICMWNA++ G AMHG GEEAL++F ++E+ G+KPNDITFIG+LH
Sbjct: 409 DINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLH 468
Query: 235 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDMAHEXXXXXXXXXXX 414
ACSHA LVT+G LF M H FG+VP++EHYG MVDLLGRAGL+D AHE
Sbjct: 469 ACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 528
Query: 415 XVWG 426
VWG
Sbjct: 529 IVWG 532
Score = 38.5 bits (88), Expect(2) = 1e-41
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +3
Query: 423 GALLAVYKLHKNMRLGEVAAKQLLEME 503
GAL+A +LHKN +LGE+AA QLLE+E
Sbjct: 532 GALVAACRLHKNPQLGELAATQLLEIE 558
Score = 53.5 bits (127), Expect(2) = 2e-06
Identities = 30/105 (28%), Positives = 53/105 (50%)
Frame = +1
Query: 58 IDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLHA 237
++ AR +F+ + RD+ +W AML A C ++A LF Q+ +G++P +T + +L
Sbjct: 309 LEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSL 368
Query: 238 CSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDM 372
C+ A + G + H + +VE VD + L+DM
Sbjct: 369 CAVAGALDLGKWV-----HSYIDKERVE-----VDCILNTALVDM 403
Score = 22.7 bits (47), Expect(2) = 2e-06
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3
Query: 24 LVDMYAKCG 50
L+DMYAKCG
Sbjct: 268 LLDMYAKCG 276
>emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 156 bits (394), Expect(2) = 1e-41
Identities = 74/124 (59%), Positives = 92/124 (74%)
Frame = +1
Query: 55 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 234
DI+ A +F ++ RDICMWNA++ G AMHG GEEAL++F ++E+ G+KPNDITFIG+LH
Sbjct: 323 DINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLH 382
Query: 235 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDMAHEXXXXXXXXXXX 414
ACSHA LVT+G LF M H FG+VP++EHYG MVDLLGRAGL+D AHE
Sbjct: 383 ACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNT 442
Query: 415 XVWG 426
VWG
Sbjct: 443 IVWG 446
Score = 38.5 bits (88), Expect(2) = 1e-41
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +3
Query: 423 GALLAVYKLHKNMRLGEVAAKQLLEME 503
GAL+A +LHKN +LGE+AA QLLE+E
Sbjct: 446 GALVAACRLHKNPQLGELAATQLLEIE 472
>ref|XP_002319650.1| predicted protein [Populus trichocarpa] gi|222858026|gb|EEE95573.1|
predicted protein [Populus trichocarpa]
Length = 705
Score = 147 bits (372), Expect(3) = 2e-40
Identities = 70/124 (56%), Positives = 88/124 (70%)
Frame = +1
Query: 55 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 234
DI A+ +F+++ RDIC WN M+ G MHG GE+AL+LF ++E G+KPNDITFIG LH
Sbjct: 383 DISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALH 442
Query: 235 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDMAHEXXXXXXXXXXX 414
ACSHA LV +G LF M H+FG+VPKVEHYG MVDLLGRAGL+D A++
Sbjct: 443 ACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNI 502
Query: 415 XVWG 426
+WG
Sbjct: 503 AIWG 506
Score = 36.6 bits (83), Expect(3) = 2e-40
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +3
Query: 423 GALLAVYKLHKNMRLGEVAAKQLLEME 503
GA+LA K+HKN +GE+AA++LL +E
Sbjct: 506 GAMLAACKIHKNSNMGELAARELLALE 532
Score = 26.9 bits (58), Expect(3) = 2e-40
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 9 IYRKQLVDMYAKCGD 53
I + L+DMYAKCGD
Sbjct: 369 ILKTALIDMYAKCGD 383
Score = 54.3 bits (129), Expect(2) = 1e-06
Identities = 30/106 (28%), Positives = 52/106 (49%)
Frame = +1
Query: 55 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 234
+I AR IF+ +D+ W AM+ A C + A +LF Q+ G++PN++T + +L
Sbjct: 282 EIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLS 341
Query: 235 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDM 372
C+ + G H + ++ G VD++ + LIDM
Sbjct: 342 LCAVNGALDMGKWF-----HAY-----IDKQGVEVDVILKTALIDM 377
Score = 23.1 bits (48), Expect(2) = 1e-06
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 24 LVDMYAKCGD 53
LVDMY KCG+
Sbjct: 273 LVDMYGKCGE 282
>ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 147 bits (371), Expect(2) = 1e-34
Identities = 78/147 (53%), Positives = 92/147 (62%)
Frame = +1
Query: 55 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 234
DID A +F ++ RDI MWNAM+ G AMHG GE ALELF ++E G+ PNDITFIG LH
Sbjct: 479 DIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALH 538
Query: 235 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDMAHEXXXXXXXXXXX 414
ACSH+ L+ +G LF M HEFG PKVEHYG MVDLLGRAGL+D AHE
Sbjct: 539 ACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNI 598
Query: 415 XVWGLFSLSTSFTKI*DWGK*QQSSFL 495
V+G F + K G+ FL
Sbjct: 599 AVFGSFLAACKLHKNIKLGEWAAKQFL 625
Score = 24.3 bits (51), Expect(2) = 1e-34
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 9 IYRKQLVDMYAKCGD 53
I + VDMYA CGD
Sbjct: 465 ILKTSFVDMYANCGD 479
Score = 58.2 bits (139), Expect(2) = 1e-07
Identities = 32/108 (29%), Positives = 56/108 (51%)
Frame = +1
Query: 55 DIDRARWIFNKSPVRDICMWNAMLCGLAMHGCGEEALELFFQLEKTGIKPNDITFIGVLH 234
D+ AR +F+ +D+ MW+AM+ A + C +EA ++F + GI+PN+ T + +L
Sbjct: 378 DVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLM 437
Query: 235 ACSHAKLVTKGHTLFS*M*HEFGVVPKVEHYGYMVDLLGRAGLIDMAH 378
C+ A + G + S + + G+ + VD+ G ID AH
Sbjct: 438 ICAKAGSLEMGKWIHSYI-DKQGIKGDMILKTSFVDMYANCGDIDTAH 484
Score = 22.7 bits (47), Expect(2) = 1e-07
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 27 VDMYAKCGD 53
+DMY KCGD
Sbjct: 370 IDMYGKCGD 378