BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024620
         (218 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...    75   7e-12
emb|CBI26820.3| unnamed protein product [Vitis vinifera]               74   9e-12
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...    74   9e-12
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]    74   9e-12
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...    67   1e-09

>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 30/34 (88%), Positives = 31/34 (91%)
 Frame = -3

Query: 216  DYWGCYNEGMNRSHFLSFPWCVYDKLIHIKRMNS 115
            +YWGCYNEGMNR HFLSFPWCVYDKLI IKR NS
Sbjct: 1077 NYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNS 1110


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 30/38 (78%), Positives = 31/38 (81%)
 Frame = -3

Query: 216 DYWGCYNEGMNRSHFLSFPWCVYDKLIHIKRMNSQTRS 103
           DYWGCYNEGM+R HFLSFPWCVYDKLIH KR     RS
Sbjct: 865 DYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRS 902


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 30/38 (78%), Positives = 31/38 (81%)
 Frame = -3

Query: 216  DYWGCYNEGMNRSHFLSFPWCVYDKLIHIKRMNSQTRS 103
            DYWGCYNEGM+R HFLSFPWCVYDKLIH KR     RS
Sbjct: 1067 DYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRS 1104


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 30/38 (78%), Positives = 31/38 (81%)
 Frame = -3

Query: 216 DYWGCYNEGMNRSHFLSFPWCVYDKLIHIKRMNSQTRS 103
           DYWGCYNEGM+R HFLSFPWCVYDKLIH KR     RS
Sbjct: 600 DYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRS 637


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = -3

Query: 213  YWGCYNEGMNRSHFLSFPWCVYDKLIHIKRMNSQTRSN*TVIEKL 79
            YWG YNEG+NR HFLSF WCVYDKL+ IK+ N+  R     +E+L
Sbjct: 1056 YWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNAGRRQRQETLERL 1100