BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024615
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   129   2e-28
ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28
gb|AAG12522.1|AC015446_3 Hypothetical Protein [Arabidopsis thali...   125   3e-27
ref|NP_174678.2| pentatricopeptide repeat-containing protein [Ar...   125   3e-27
ref|XP_002891080.1| pentatricopeptide repeat-containing protein ...   124   8e-27

>ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  129 bits (324), Expect = 2e-28
 Identities = 68/120 (56%), Positives = 85/120 (70%), Gaps = 3/120 (2%)
 Frame = -1

Query: 353 LLSKCKTFEQIKQVQSHLITTGHFQICPSRTKLLEICAISPSGNLIYATQIFKTIKFPST 174
           LL KC +F QIKQ+Q++LI  G F    SRTKLLE+CAIS  G+L YA  IF+ I +PST
Sbjct: 7   LLQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPYPST 66

Query: 173 SDWNAIIRGFAKSNVPKHAFKYYKSSFFSN---RPDALTCSFVLKACARILAIFQARQIH 3
           +DWNA+IRG A S+ P +A  +Y++   SN   R DALTCSF LKACAR LA  +A Q+H
Sbjct: 67  NDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLH 126


>ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  129 bits (324), Expect = 2e-28
 Identities = 68/120 (56%), Positives = 85/120 (70%), Gaps = 3/120 (2%)
 Frame = -1

Query: 353 LLSKCKTFEQIKQVQSHLITTGHFQICPSRTKLLEICAISPSGNLIYATQIFKTIKFPST 174
           LL KC +F QIKQ+Q++LI  G F    SRTKLLE+CAIS  G+L YA  IF+ I +PST
Sbjct: 7   LLQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPYPST 66

Query: 173 SDWNAIIRGFAKSNVPKHAFKYYKSSFFSN---RPDALTCSFVLKACARILAIFQARQIH 3
           +DWNA+IRG A S+ P +A  +Y++   SN   R DALTCSF LKACAR LA  +A Q+H
Sbjct: 67  NDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLH 126


>gb|AAG12522.1|AC015446_3 Hypothetical Protein [Arabidopsis thaliana]
          Length = 539

 Score =  125 bits (315), Expect = 3e-27
 Identities = 66/124 (53%), Positives = 82/124 (66%), Gaps = 7/124 (5%)
 Frame = -1

Query: 353 LLSKCKTFEQIKQVQSHLITTGHFQICPSRTKLLEICAISPSGNLIYATQIFKTIKFPST 174
           ++ KC +F QIKQ+QSH +T GHFQ    R++LLE CAISP G+L +A QIF+ I  P T
Sbjct: 9   MIQKCVSFSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPKPLT 68

Query: 173 SDWNAIIRGFAKSNVPKHAFKYYKSSFFSN-------RPDALTCSFVLKACARILAIFQA 15
           +DWNAIIRGFA S+ P  AF +Y+S    +       R DALTCSF LKACAR L     
Sbjct: 69  NDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSAM 128

Query: 14  RQIH 3
            Q+H
Sbjct: 129 DQLH 132


>ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g34160 gi|332193557|gb|AEE31678.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  125 bits (315), Expect = 3e-27
 Identities = 66/124 (53%), Positives = 82/124 (66%), Gaps = 7/124 (5%)
 Frame = -1

Query: 353 LLSKCKTFEQIKQVQSHLITTGHFQICPSRTKLLEICAISPSGNLIYATQIFKTIKFPST 174
           ++ KC +F QIKQ+QSH +T GHFQ    R++LLE CAISP G+L +A QIF+ I  P T
Sbjct: 9   MIQKCVSFSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPKPLT 68

Query: 173 SDWNAIIRGFAKSNVPKHAFKYYKSSFFSN-------RPDALTCSFVLKACARILAIFQA 15
           +DWNAIIRGFA S+ P  AF +Y+S    +       R DALTCSF LKACAR L     
Sbjct: 69  NDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSAM 128

Query: 14  RQIH 3
            Q+H
Sbjct: 129 DQLH 132


>ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336922|gb|EFH67339.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 562

 Score =  124 bits (311), Expect = 8e-27
 Identities = 66/123 (53%), Positives = 81/123 (65%), Gaps = 6/123 (4%)
 Frame = -1

Query: 353 LLSKCKTFEQIKQVQSHLITTGHFQICPSRTKLLEICAISPSGNLIYATQIFKTIKFPST 174
           ++  C TF QIKQ+QSH +T GHFQ    R++LLE CAISP G+L +A +IF+ I  P T
Sbjct: 9   MIQNCVTFSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVKIFRHIPKPLT 68

Query: 173 SDWNAIIRGFAKSNVPKHAFKYYKSSFFSN------RPDALTCSFVLKACARILAIFQAR 12
           +DWNAIIRGFA S+ P  AF +Y+S    +      R DALTCSF LKACAR L      
Sbjct: 69  NDWNAIIRGFAGSSHPSLAFSWYRSMLQRSSSSALCRVDALTCSFTLKACARALCSSAMV 128

Query: 11  QIH 3
           QIH
Sbjct: 129 QIH 131