BLASTX nr result

ID: Coptis24_contig00024607 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024607
         (461 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279922.1| PREDICTED: pollen-specific protein SF3 isofo...    60   2e-07
gb|ADG58060.1| transcription factor [Lycoris longituba]                60   2e-07
gb|ADG57896.1| transcription factor [Lycoris longituba]                60   2e-07
ref|XP_004138434.1| PREDICTED: pollen-specific protein SF3-like ...    59   4e-07
gb|ACX47456.1| LIM1 [Hevea brasiliensis]                               59   4e-07

>ref|XP_002279922.1| PREDICTED: pollen-specific protein SF3 isoform 1 [Vitis vinifera]
           gi|147859521|emb|CAN81425.1| hypothetical protein
           VITISV_014590 [Vitis vinifera]
           gi|296086105|emb|CBI31546.3| unnamed protein product
           [Vitis vinifera]
          Length = 189

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -1

Query: 371 LSNYSSMKVVMYCKPHFAQLFKESANFNWNFQS 273
           LSNYSSM+ V+YCKPHF QLFKES NFN NFQS
Sbjct: 46  LSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQS 78


>gb|ADG58060.1| transcription factor [Lycoris longituba]
          Length = 138

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -1

Query: 371 LSNYSSMKVVMYCKPHFAQLFKESANFNWNFQS 273
           LSNYSSM+ V+YCKPHF QLFKES NFN NFQS
Sbjct: 46  LSNYSSMEGVLYCKPHFDQLFKESGNFNKNFQS 78


>gb|ADG57896.1| transcription factor [Lycoris longituba]
          Length = 97

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -1

Query: 371 LSNYSSMKVVMYCKPHFAQLFKESANFNWNFQS 273
           LSNYSSM+ V+YCKPHF QLFKES NFN NFQS
Sbjct: 46  LSNYSSMEGVLYCKPHFDQLFKESGNFNKNFQS 78


>ref|XP_004138434.1| PREDICTED: pollen-specific protein SF3-like [Cucumis sativus]
           gi|449516649|ref|XP_004165359.1| PREDICTED:
           pollen-specific protein SF3-like [Cucumis sativus]
          Length = 189

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = -1

Query: 371 LSNYSSMKVVMYCKPHFAQLFKESANFNWNFQS 273
           LSNYSSM+ V+YCKPHF QLFKE+ NFN NFQS
Sbjct: 46  LSNYSSMEGVLYCKPHFEQLFKETGNFNKNFQS 78


>gb|ACX47456.1| LIM1 [Hevea brasiliensis]
          Length = 189

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = -1

Query: 371 LSNYSSMKVVMYCKPHFAQLFKESANFNWNFQS 273
           LSNYSSM+ V+YCKPHF QLFKE+ NFN NFQS
Sbjct: 46  LSNYSSMEGVLYCKPHFEQLFKETGNFNKNFQS 78


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