BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024605
         (1319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF64713.1| 70 kDa subunit of replication protein A [Ipomoea...   520   e-145
emb|CBI15109.3| unnamed protein product [Vitis vinifera]              517   e-144
ref|XP_002283959.1| PREDICTED: replication protein A 70 kDa DNA-...   517   e-144
ref|XP_002514651.1| replication factor A 1, rfa1, putative [Rici...   516   e-144
ref|XP_002328669.1| predicted protein [Populus trichocarpa] gi|2...   510   e-142

>dbj|BAF64713.1| 70 kDa subunit of replication protein A [Ipomoea nil]
          Length = 604

 Score =  520 bits (1339), Expect = e-145
 Identities = 264/386 (68%), Positives = 317/386 (82%), Gaps = 3/386 (0%)
 Frame = -3

Query: 1317 QKFYDKFEMGKVYYISKGTLKLANKQFKTVQNDYEMTLNXXXXXXXXXXXXXXVPETKFN 1138
            +KFYDKFE+GKVYYISKGTL++ANKQFKTVQNDYEMTLN              VPETKFN
Sbjct: 217  RKFYDKFELGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEAINEAAFVPETKFN 276

Query: 1137 FVQIDQLSSYVNGRELVDVIGVVQNVSPTMSIRRKLNNEIVPKRDITIADDSKKTVVVSL 958
            FV ID+L SYVNGRELVDVIGVVQNVS TMSIRRK NNE++PKRDITIAD++KKTVVVSL
Sbjct: 277  FVAIDELGSYVNGRELVDVIGVVQNVSSTMSIRRKSNNEMIPKRDITIADETKKTVVVSL 336

Query: 957  WNDHATNIGQELLDTVDSAPIVAIKSLKVGDFQGVXXXXXXXXXXLVNPDVPESKRLRTW 778
            W+D ATN+GQELLD  D +P+VAI+S+KVGDFQG+          LVNPD+PE+K+LR+W
Sbjct: 337  WSDLATNVGQELLDMADKSPVVAIRSVKVGDFQGLSLSAITRSTVLVNPDMPEAKKLRSW 396

Query: 777  YNSEGKETTMDSVGSGMVSNTSWKGVK-SMYSDRVCVSHITSNLSLGDDKPV-FCMKACI 604
            Y+ EGKET++ SVGSG+  ++S KGV  SMYSDRV + HITSN +LG+DKPV F +KA I
Sbjct: 397  YDCEGKETSLTSVGSGL--SSSAKGVLWSMYSDRVSLLHITSNPNLGEDKPVFFSIKANI 454

Query: 603  SNIKPDQTMWYQACKVCNKKVTDGMGSGYWCGGCQKNVEEFSLRYILVVRIFDPSGGAYV 424
            S IKP+Q MWY+ACK CNKKVT+ +GSGYWC GCQKN  + SLRYI+ +R+ D SG A++
Sbjct: 455  SFIKPEQAMWYRACKTCNKKVTEAIGSGYWCEGCQKNDTDCSLRYIVAMRVSDTSGEAWL 514

Query: 423  SVFNEQAEKIIGCSADELDKMK-KDGDETSYLLKLKEATWAPHVFCVVVTQADYNNEKRQ 247
            SVFNEQAEKIIGCSADELD+++ +DGD ++Y +KLKEATW P++F V VT  +YNNEKRQ
Sbjct: 515  SVFNEQAEKIIGCSADELDRLRSQDGDSSAYQMKLKEATWVPYLFRVSVTPQEYNNEKRQ 574

Query: 246  RITVRDLAPVDFVAESRFLLEEISKM 169
            RITVR  APVDF AESR+ LEE++KM
Sbjct: 575  RITVRAAAPVDFAAESRYFLEEMAKM 600


>emb|CBI15109.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  517 bits (1332), Expect = e-144
 Identities = 262/388 (67%), Positives = 309/388 (79%), Gaps = 2/388 (0%)
 Frame = -3

Query: 1317 QKFYDKFEMGKVYYISKGTLKLANKQFKTVQNDYEMTLNXXXXXXXXXXXXXXVPETKFN 1138
            +KFY+KF++GKVYYISKG LK+ANKQFKTVQNDYEMTLN              +PE KF 
Sbjct: 215  RKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETFIPEAKFK 274

Query: 1137 FVQIDQLSSYVNGRELVDVIGVVQNVSPTMSIRRKLNNEIVPKRDITIADDSKKTVVVSL 958
            FV+I++L  YVNG+ELVDVIGVVQ+VSPTMSIRRK NN+IVPKRDITIAD +KKTVVVSL
Sbjct: 275  FVEIEELGPYVNGKELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSL 334

Query: 957  WNDHATNIGQELLDTVDSAPIVAIKSLKVGDFQGVXXXXXXXXXXLVNPDVPESKRLRTW 778
            WNDHATN+GQELLD  D  PIVAIKSLKVGDFQGV          LVNPD PESK+LR+W
Sbjct: 335  WNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPESKKLRSW 394

Query: 777  YNSEGKETTMDSVGSGMVSNTSWKGVKSMYSDRVCVSHITSNLSLGDDKP-VFCMKACIS 601
            Y+SEGK  +M S+GS  +S +S  GVKSMY DRV +SH+TSN SLG+DKP  F ++A IS
Sbjct: 395  YDSEGKGASMASIGSD-ISPSSKGGVKSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYIS 453

Query: 600  NIKPDQTMWYQACKVCNKKVTDGMGSGYWCGGCQKNVEEFSLRYILVVRIFDPSGGAYVS 421
             IKPDQTMWY+ACK CNKKVTD +GSGYWC GCQKN +E SLRYI+VV++ D SG A++S
Sbjct: 454  FIKPDQTMWYRACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLS 513

Query: 420  VFNEQAEKIIGCSADELDKMK-KDGDETSYLLKLKEATWAPHVFCVVVTQADYNNEKRQR 244
            +FNEQAE++ GCSADELDK+K ++G+E  +  KLKEA W PH+F + V Q +Y NEKRQR
Sbjct: 514  LFNEQAERMFGCSADELDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEYMNEKRQR 573

Query: 243  ITVRDLAPVDFVAESRFLLEEISKMQDS 160
            IT R + PVDF AESR LLEEISKM+ S
Sbjct: 574  ITARAVVPVDFAAESRLLLEEISKMKTS 601


>ref|XP_002283959.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform 1
            [Vitis vinifera]
          Length = 625

 Score =  517 bits (1332), Expect = e-144
 Identities = 262/388 (67%), Positives = 309/388 (79%), Gaps = 2/388 (0%)
 Frame = -3

Query: 1317 QKFYDKFEMGKVYYISKGTLKLANKQFKTVQNDYEMTLNXXXXXXXXXXXXXXVPETKFN 1138
            +KFY+KF++GKVYYISKG LK+ANKQFKTVQNDYEMTLN              +PE KF 
Sbjct: 238  RKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETFIPEAKFK 297

Query: 1137 FVQIDQLSSYVNGRELVDVIGVVQNVSPTMSIRRKLNNEIVPKRDITIADDSKKTVVVSL 958
            FV+I++L  YVNG+ELVDVIGVVQ+VSPTMSIRRK NN+IVPKRDITIAD +KKTVVVSL
Sbjct: 298  FVEIEELGPYVNGKELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSL 357

Query: 957  WNDHATNIGQELLDTVDSAPIVAIKSLKVGDFQGVXXXXXXXXXXLVNPDVPESKRLRTW 778
            WNDHATN+GQELLD  D  PIVAIKSLKVGDFQGV          LVNPD PESK+LR+W
Sbjct: 358  WNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPESKKLRSW 417

Query: 777  YNSEGKETTMDSVGSGMVSNTSWKGVKSMYSDRVCVSHITSNLSLGDDKP-VFCMKACIS 601
            Y+SEGK  +M S+GS  +S +S  GVKSMY DRV +SH+TSN SLG+DKP  F ++A IS
Sbjct: 418  YDSEGKGASMASIGSD-ISPSSKGGVKSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYIS 476

Query: 600  NIKPDQTMWYQACKVCNKKVTDGMGSGYWCGGCQKNVEEFSLRYILVVRIFDPSGGAYVS 421
             IKPDQTMWY+ACK CNKKVTD +GSGYWC GCQKN +E SLRYI+VV++ D SG A++S
Sbjct: 477  FIKPDQTMWYRACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLS 536

Query: 420  VFNEQAEKIIGCSADELDKMK-KDGDETSYLLKLKEATWAPHVFCVVVTQADYNNEKRQR 244
            +FNEQAE++ GCSADELDK+K ++G+E  +  KLKEA W PH+F + V Q +Y NEKRQR
Sbjct: 537  LFNEQAERMFGCSADELDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEYMNEKRQR 596

Query: 243  ITVRDLAPVDFVAESRFLLEEISKMQDS 160
            IT R + PVDF AESR LLEEISKM+ S
Sbjct: 597  ITARAVVPVDFAAESRLLLEEISKMKTS 624


>ref|XP_002514651.1| replication factor A 1, rfa1, putative [Ricinus communis]
            gi|223546255|gb|EEF47757.1| replication factor A 1, rfa1,
            putative [Ricinus communis]
          Length = 622

 Score =  516 bits (1329), Expect = e-144
 Identities = 259/387 (66%), Positives = 307/387 (79%), Gaps = 1/387 (0%)
 Frame = -3

Query: 1317 QKFYDKFEMGKVYYISKGTLKLANKQFKTVQNDYEMTLNXXXXXXXXXXXXXXVPETKFN 1138
            +KFYDKF++GKVYYISKG+LK+ANKQF+TVQNDYEM LN              +PETKFN
Sbjct: 236  RKFYDKFQLGKVYYISKGSLKVANKQFRTVQNDYEMNLNENSQVEEASDEAAFIPETKFN 295

Query: 1137 FVQIDQLSSYVNGRELVDVIGVVQNVSPTMSIRRKLNNEIVPKRDITIADDSKKTVVVSL 958
            FV IDQL  YV+  ELVDVIGVVQ+VSPTMSIRRK NN+IVPKRDITIAD++KKTVVVSL
Sbjct: 296  FVPIDQLGPYVSTNELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADETKKTVVVSL 355

Query: 957  WNDHATNIGQELLDTVDSAPIVAIKSLKVGDFQGVXXXXXXXXXXLVNPDVPESKRLRTW 778
            WND AT++GQELLD  D +P+VAIK+LKVGDFQGV           VNPD PESK+L++W
Sbjct: 356  WNDLATDVGQELLDMADKSPVVAIKALKVGDFQGVSLSTLGRSIIQVNPDTPESKKLKSW 415

Query: 777  YNSEGKETTMDSVGSGMVSNTSWKGVKSMYSDRVCVSHITSNLSLGDDKPV-FCMKACIS 601
            ++SEGKET++ SVG+G+  +T   G  SMYSDRV +SHITSN SLG DKP  F ++A IS
Sbjct: 416  FDSEGKETSLASVGAGLSPSTK-SGGGSMYSDRVSISHITSNPSLGSDKPAFFSIRAYIS 474

Query: 600  NIKPDQTMWYQACKVCNKKVTDGMGSGYWCGGCQKNVEEFSLRYILVVRIFDPSGGAYVS 421
             IKPDQ+MWY+ACK CNKKVT+ +G GYWC GCQKN  E SLRYI+VV++ D SG  +VS
Sbjct: 475  FIKPDQSMWYRACKTCNKKVTEAIGGGYWCEGCQKNDAECSLRYIMVVKVSDASGEGWVS 534

Query: 420  VFNEQAEKIIGCSADELDKMKKDGDETSYLLKLKEATWAPHVFCVVVTQADYNNEKRQRI 241
             FN + E+IIGCSADELDK+K   D  SY LKLKEATW+PH+F V V Q +YNNEKRQRI
Sbjct: 535  AFNNEGERIIGCSADELDKLKSQEDGNSYELKLKEATWSPHLFRVSVAQNEYNNEKRQRI 594

Query: 240  TVRDLAPVDFVAESRFLLEEISKMQDS 160
            TVR +AP+DF AESRFLLEEISK++ S
Sbjct: 595  TVRAVAPLDFAAESRFLLEEISKIKGS 621


>ref|XP_002328669.1| predicted protein [Populus trichocarpa] gi|222838845|gb|EEE77196.1|
            predicted protein [Populus trichocarpa]
          Length = 603

 Score =  510 bits (1313), Expect = e-142
 Identities = 255/387 (65%), Positives = 304/387 (78%), Gaps = 1/387 (0%)
 Frame = -3

Query: 1317 QKFYDKFEMGKVYYISKGTLKLANKQFKTVQNDYEMTLNXXXXXXXXXXXXXXVPETKFN 1138
            +KFYD+FE+GKVYYISKGTL++ANKQFKTVQNDYEMTLN              +PETKF 
Sbjct: 217  KKFYDRFELGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEASDEAACIPETKFK 276

Query: 1137 FVQIDQLSSYVNGRELVDVIGVVQNVSPTMSIRRKLNNEIVPKRDITIADDSKKTVVVSL 958
            FV IDQL  YVN ++LVDVIG+VQ+VSPT SIRRK NNE VPKRDI +AD++KKTVVVSL
Sbjct: 277  FVPIDQLGPYVNSKDLVDVIGIVQSVSPTTSIRRKSNNETVPKRDIVVADETKKTVVVSL 336

Query: 957  WNDHATNIGQELLDTVDSAPIVAIKSLKVGDFQGVXXXXXXXXXXLVNPDVPESKRLRTW 778
            WN+ AT++GQEL D  D +P+VAIKSLKVGDFQG+           VNP + ES++LR W
Sbjct: 337  WNELATSVGQELHDIADKSPVVAIKSLKVGDFQGISLSTLGKSIVQVNPVIAESEKLRNW 396

Query: 777  YNSEGKETTMDSVGSGMVSNTSWKGVKSMYSDRVCVSHITSNLSLGDDKPV-FCMKACIS 601
            Y+SEGKET+M SVGSG+  +T   G +SMYSDRV +SHITSN SLG+DKP  F ++A IS
Sbjct: 397  YDSEGKETSMASVGSGLSPSTK-SGARSMYSDRVSLSHITSNPSLGEDKPAFFSIRAYIS 455

Query: 600  NIKPDQTMWYQACKVCNKKVTDGMGSGYWCGGCQKNVEEFSLRYILVVRIFDPSGGAYVS 421
             IKPDQTMWY+ACK CNKKVTD +G GYWC GCQKN  E SLRYI+VV++ D SG  +VS
Sbjct: 456  FIKPDQTMWYRACKTCNKKVTDALGGGYWCEGCQKNDAECSLRYIMVVKVSDGSGEGWVS 515

Query: 420  VFNEQAEKIIGCSADELDKMKKDGDETSYLLKLKEATWAPHVFCVVVTQADYNNEKRQRI 241
             FNE+AEKIIGCSADELD +K   +E +Y  +LKEATW PH+  + V+Q +YNNEKRQR+
Sbjct: 516  AFNEEAEKIIGCSADELDLLKSQIEENTYQQRLKEATWNPHLLRISVSQNEYNNEKRQRM 575

Query: 240  TVRDLAPVDFVAESRFLLEEISKMQDS 160
            TVR +APVDF AESRFLLEEISKM+ S
Sbjct: 576  TVRAVAPVDFAAESRFLLEEISKMKGS 602