BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024596
         (466 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_173426.1| hypothetical protein NitaMp085 [Nicotiana tabac...    90   3e-34
emb|CBI23503.3| unnamed protein product [Vitis vinifera]              115   3e-24
sp|P15688.2|NU2M_BETVU RecName: Full=NADH-ubiquinone oxidoreduct...   107   8e-22
emb|CAA34729.1| unnamed protein product [Beta vulgaris subsp. vu...   103   2e-20
ref|XP_002534065.1| conserved hypothetical protein [Ricinus comm...    75   1e-17

>ref|YP_173426.1| hypothetical protein NitaMp085 [Nicotiana tabacum]
           gi|56806590|dbj|BAD83491.1| hypothetical protein
           (mitochondrion) [Nicotiana tabacum]
          Length = 162

 Score = 90.1 bits (222), Expect(2) = 3e-34
 Identities = 44/47 (93%), Positives = 44/47 (93%)
 Frame = -2

Query: 297 QQVRHLLQKRESTSDNHASARQRVEWPRADLFGYIIQVESGVTGTAV 157
           QQVRHLLQKRESTSDNH SARQRVEWPRADLFGYIIQVES VTG AV
Sbjct: 116 QQVRHLLQKRESTSDNHVSARQRVEWPRADLFGYIIQVESRVTGKAV 162



 Score = 80.1 bits (196), Expect(2) = 3e-34
 Identities = 40/44 (90%), Positives = 42/44 (95%)
 Frame = -1

Query: 463 GMIAGPSPRSARWPMGIAAFGLCLPFLIKNSGSARESAGNNRKE 332
           GMIAGPSPRSA  P+GIAAFGLCLPF+IKNSGSARESAGNNRKE
Sbjct: 57  GMIAGPSPRSAL-PIGIAAFGLCLPFIIKNSGSARESAGNNRKE 99


>emb|CBI23503.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  115 bits (289), Expect = 3e-24
 Identities = 56/63 (88%), Positives = 56/63 (88%), Gaps = 4/63 (6%)
 Frame = -3

Query: 407 LRALPALSNKEFRLGPGKRWQQQKGRGPCSCCARPL----SSRFGIYYKRENPLQITTPL 240
           LRALPAL NKEFRLGPGKRWQQQKGRGPCSCCARPL     SRFGIYYKRENPLQITTPL
Sbjct: 182 LRALPALYNKEFRLGPGKRWQQQKGRGPCSCCARPLLSQWGSRFGIYYKRENPLQITTPL 241

Query: 239 PGS 231
            GS
Sbjct: 242 LGS 244


>sp|P15688.2|NU2M_BETVU RecName: Full=NADH-ubiquinone oxidoreductase chain 2; AltName:
           Full=NADH dehydrogenase subunit 2
           gi|12822|emb|CAA34728.1| NADH:ubiquinone reductase
           subunit 2 [Beta vulgaris subsp. vulgaris]
          Length = 515

 Score =  107 bits (268), Expect = 8e-22
 Identities = 75/159 (47%), Positives = 80/159 (50%), Gaps = 5/159 (3%)
 Frame = -1

Query: 466 GGMIAGPSPRSARWPMGIAAFGLCLPFLIKNSGSARESAGNNRKE----XXXXXXXXXXX 299
           GGMI GPSPRSARWP+GIAAFGLCL FLIKNSGSARESAGNNRKE               
Sbjct: 50  GGMIFGPSPRSARWPIGIAAFGLCLLFLIKNSGSARESAGNNRKEGVHVAAASAPFLVNR 109

Query: 298 XXXXXSTTKERIHFR*PRL-CQAACGMAESGPFWIYNPSREWSYGNSRLMXXXXXXXXXX 122
                +TTKERIHF+       AACGMA S  F           G + LM          
Sbjct: 110 AAGSATTTKERIHFKITNASAMAACGMAGSDLFGYIIQVESGVTGTAGLMENNFHGSVQR 169

Query: 121 XXXXXXFLVPFRVNSPAAN*QLVGPIYSISRAPKKTPSP 5
                  L   RVNS A      GP    S +P KTP P
Sbjct: 170 ALFSLRILRSLRVNSLARIQNFWGPSIP-SSSPAKTPLP 207


>emb|CAA34729.1| unnamed protein product [Beta vulgaris subsp. vulgaris]
          Length = 464

 Score =  103 bits (256), Expect = 2e-20
 Identities = 73/157 (46%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
 Frame = -1

Query: 460 MIAGPSPRSARWPMGIAAFGLCLPFLIKNSGSARESAGNNRKE----XXXXXXXXXXXXX 293
           MI GPSPRSARWP+GIAAFGLCL FLIKNSGSARESAGNNRKE                 
Sbjct: 1   MIFGPSPRSARWPIGIAAFGLCLLFLIKNSGSARESAGNNRKEGVHVAAASAPFLVNRAA 60

Query: 292 XXXSTTKERIHFR*PRL-CQAACGMAESGPFWIYNPSREWSYGNSRLMXXXXXXXXXXXX 116
              +TTKERIHF+       AACGMA S  F           G + LM            
Sbjct: 61  GSATTTKERIHFKITNASAMAACGMAGSDLFGYIIQVESGVTGTAGLMENNFHGSVQRAL 120

Query: 115 XXXXFLVPFRVNSPAAN*QLVGPIYSISRAPKKTPSP 5
                L   RVNS A      GP    S +P KTP P
Sbjct: 121 FSLRILRSLRVNSLARIQNFWGPSIP-SSSPAKTPLP 156


>ref|XP_002534065.1| conserved hypothetical protein [Ricinus communis]
           gi|223525904|gb|EEF28320.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 83

 Score = 74.7 bits (182), Expect(2) = 1e-17
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = -3

Query: 419 GDSSLRALPALSNKEFRLGPGKRWQQQKGRGPCSCCARPLSSRFG 285
           GDSSL+ALPALSNK FRL P +RWQQ KG+GPCSC  RPL S++G
Sbjct: 33  GDSSLQALPALSNKNFRLDPRERWQQHKGKGPCSCYVRPLLSKWG 77



 Score = 40.0 bits (92), Expect(2) = 1e-17
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = -1

Query: 466 GGMIAGPSPRSARWPMG 416
           GGMIAGPSPRSARWP+G
Sbjct: 17  GGMIAGPSPRSARWPIG 33