BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024563
         (322 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003575540.1| PREDICTED: pentatricopeptide repeat-containi...    99   5e-19
ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [S...    97   1e-18
gb|AFW73259.1| hypothetical protein ZEAMMB73_606431 [Zea mays]         96   3e-18
ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arab...    96   4e-18
ref|NP_172105.4| uncharacterized basic helix-loop-helix protein ...    95   5e-18

>ref|XP_003575540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 491

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 49/100 (49%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
 Frame = -3

Query: 302 EAFRLFLRLQ-LSGLVPDETTLMTIISVISNLGLLCLGKQIHGYVIRNEFSLDAGFGAAL 126
           EA  LF+ +  + GLVPDE T++  +S + N+GLL LG+  HGYVIR EFSLD   G  L
Sbjct: 183 EAVELFVEMTTVYGLVPDEATMVGFVSAVRNIGLLGLGRSAHGYVIRREFSLDGALGVGL 242

Query: 125 IDMYSKCGTIHSALKVFQDTQNKNNVGHWTSMIVGYAVNG 6
           I+MY++CG++ +A   F    +K NV HWTS I G+A +G
Sbjct: 243 INMYTRCGSMTAAYLCFSSVTSK-NVEHWTSAIGGFAAHG 281


>ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
           gi|241932439|gb|EES05584.1| hypothetical protein
           SORBIDRAFT_04g028970 [Sorghum bicolor]
          Length = 485

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 47/100 (47%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
 Frame = -3

Query: 302 EAFRLFLRLQLS-GLVPDETTLMTIISVISNLGLLCLGKQIHGYVIRNEFSLDAGFGAAL 126
           EA  LF+ + ++ GL PDE T++  +S + ++GLL +GK  HGYV+R EFSLD   G AL
Sbjct: 175 EAVDLFVEMTVAYGLAPDEATMVGFVSAVRDIGLLGIGKSAHGYVLRREFSLDGALGVAL 234

Query: 125 IDMYSKCGTIHSALKVFQDTQNKNNVGHWTSMIVGYAVNG 6
           I MY++CG++ +A   F     K NV HWTS+I G+A +G
Sbjct: 235 ISMYTRCGSMGAAHSCFLSVTTK-NVEHWTSLIAGFAAHG 273


>gb|AFW73259.1| hypothetical protein ZEAMMB73_606431 [Zea mays]
          Length = 488

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
 Frame = -3

Query: 299 AFRLFLRLQLS-GLVPDETTLMTIISVISNLGLLCLGKQIHGYVIRNEFSLDAGFGAALI 123
           A  LF+ + ++ GL PDE T++  +S + ++GLL +GK  HGYV+R EFSLD   G AL+
Sbjct: 180 AVDLFIEMTVAYGLAPDEATMVGFVSAVRDIGLLAIGKSAHGYVLRREFSLDGPLGVALV 239

Query: 122 DMYSKCGTIHSALKVFQDTQNKNNVGHWTSMIVGYAVNG 6
            MY++CG++ +A   F     K NV HWTS+I G+A +G
Sbjct: 240 SMYTRCGSMGAAHSCFLSVTTK-NVEHWTSLIAGFAAHG 277


>ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata] gi|297338164|gb|EFH68581.1| hypothetical protein
            ARALYDRAFT_311694 [Arabidopsis lyrata subsp. lyrata]
          Length = 1329

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 45/102 (44%), Positives = 69/102 (67%)
 Frame = -3

Query: 308  FDEAFRLFLRLQLSGLVPDETTLMTIISVISNLGLLCLGKQIHGYVIRNEFSLDAGFGAA 129
            + EA  +F ++   G++PDE T+ T+IS  ++LG+L +GK++H Y ++N F LD   G+A
Sbjct: 1020 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSA 1079

Query: 128  LIDMYSKCGTIHSALKVFQDTQNKNNVGHWTSMIVGYAVNGF 3
            L+DMYSKCG++  AL VF +   K N+  W S+I G A +GF
Sbjct: 1080 LVDMYSKCGSLERALLVFFNLP-KKNLFCWNSIIEGLAAHGF 1120


>ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
            gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity
            to an unknown protein T5J8.5 gi|4263522 from Arabidopsis
            thaliana BAC T5J8 gb|AC004044 and contains multiple PPR
            PF|01535 repeats. ESTs gb|AV565358, gb|AV558710,
            gb|AV524184 come from this gene [Arabidopsis thaliana]
            gi|332189826|gb|AEE27947.1| uncharacterized basic
            helix-loop-helix protein [Arabidopsis thaliana]
          Length = 1322

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 45/102 (44%), Positives = 69/102 (67%)
 Frame = -3

Query: 308  FDEAFRLFLRLQLSGLVPDETTLMTIISVISNLGLLCLGKQIHGYVIRNEFSLDAGFGAA 129
            + EA  +F ++   G++PDE T+ T+IS  ++LG+L +GK++H Y ++N F LD   G+A
Sbjct: 1013 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSA 1072

Query: 128  LIDMYSKCGTIHSALKVFQDTQNKNNVGHWTSMIVGYAVNGF 3
            L+DMYSKCG++  AL VF +   K N+  W S+I G A +GF
Sbjct: 1073 LVDMYSKCGSLERALLVFFNLP-KKNLFCWNSIIEGLAAHGF 1113