BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024524
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28363.3| unnamed protein product [Vitis vinifera]              122   3e-26
ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containi...   122   3e-26
ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [S...   103   1e-20
ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containi...   101   7e-20
gb|AFW71662.1| hypothetical protein ZEAMMB73_019211 [Zea mays]         99   3e-19

>emb|CBI28363.3| unnamed protein product [Vitis vinifera]
          Length = 930

 Score =  122 bits (306), Expect = 3e-26
 Identities = 58/106 (54%), Positives = 75/106 (70%)
 Frame = +3

Query: 15  GIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYVH 194
           G Q HC ++KMG  S L+LEN+LM+FY KC DL    ++F  M +++LVSWNT I GYVH
Sbjct: 241 GTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVH 300

Query: 195 NQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
           N  Y EALR+FQ +M E  +CDDF+L S+L AV+ L  L  G+EIH
Sbjct: 301 NFHYLEALRIFQILMEEVSQCDDFSLLSILKAVSGLGHLDHGKEIH 346



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 41/110 (37%), Positives = 59/110 (53%)
 Frame = +3

Query: 3   SFGAGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIIT 182
           S+G G+  H  VVK       F+EN L++ Y  C  L  +  +F  + K DLV W++I++
Sbjct: 138 SYGRGV--HGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVFGGIDKPDLVGWSSILS 195

Query: 183 GYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
           GYV N    E LR+F  M+S  ++ D F  + VL A T LE    G + H
Sbjct: 196 GYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWDFGTQAH 245



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 31/92 (33%), Positives = 49/92 (53%)
 Frame = +3

Query: 15  GIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYVH 194
           G Q H  + K G+ S   + N+L+  Y  C   + +VQ F+LMP++D  SW +I++  V 
Sbjct: 583 GTQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAFNLMPEKDTCSWTSILSARVE 642

Query: 195 NQFYHEALRVFQAMMSEDLKCDDFTLTSVLHA 290
           +    EAL +   M  ++   D  T  SVL+A
Sbjct: 643 HGHPSEALNLISQMRWKNKPADQSTFRSVLNA 674



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/89 (30%), Positives = 53/89 (59%)
 Frame = +3

Query: 66  FLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYVHNQFYHEALRVFQAMMSE 245
           F+  +L+ +      L ++ ++F  + + D   W+ +I+G+  N  + EAL++F+ M  +
Sbjct: 399 FIMTSLLKWCSLESSLETAKRVFTRVEQPDTAPWSALISGHSWNGCFAEALKLFRKMQFD 458

Query: 246 DLKCDDFTLTSVLHAVTCLEALKLGREIH 332
            +K ++FT TSV+ A   LE L+ G+E+H
Sbjct: 459 GIKANEFTFTSVILACLALENLRKGKELH 487


>ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 906

 Score =  122 bits (306), Expect = 3e-26
 Identities = 58/106 (54%), Positives = 75/106 (70%)
 Frame = +3

Query: 15  GIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYVH 194
           G Q HC ++KMG  S L+LEN+LM+FY KC DL    ++F  M +++LVSWNT I GYVH
Sbjct: 182 GTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVH 241

Query: 195 NQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
           N  Y EALR+FQ +M E  +CDDF+L S+L AV+ L  L  G+EIH
Sbjct: 242 NFHYLEALRIFQILMEEVSQCDDFSLLSILKAVSGLGHLDHGKEIH 287



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 33/110 (30%), Positives = 67/110 (60%)
 Frame = +3

Query: 3   SFGAGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIIT 182
           S  +G   H  ++K+ ++S  ++ ++L++ Y KC    ++ ++F  + + D   W+ +I+
Sbjct: 354 SLESGKMFHSLIIKLDLKSDSYVLSSLIDMYSKCGIWEAAKRVFTRVEQPDTAPWSALIS 413

Query: 183 GYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
           G+  N  + EAL++F+ M  + +K ++FT TSV+ A   LE L+ G+E+H
Sbjct: 414 GHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILACLALENLRKGKELH 463



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 41/110 (37%), Positives = 59/110 (53%)
 Frame = +3

Query: 3   SFGAGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIIT 182
           S+G G+  H  VVK       F+EN L++ Y  C  L  +  +F  + K DLV W++I++
Sbjct: 79  SYGRGV--HGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVFGGIDKPDLVGWSSILS 136

Query: 183 GYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
           GYV N    E LR+F  M+S  ++ D F  + VL A T LE    G + H
Sbjct: 137 GYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWDFGTQAH 186



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 31/92 (33%), Positives = 49/92 (53%)
 Frame = +3

Query: 15  GIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYVH 194
           G Q H  + K G+ S   + N+L+  Y  C   + +VQ F+LMP++D  SW +I++  V 
Sbjct: 559 GTQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAFNLMPEKDTCSWTSILSARVE 618

Query: 195 NQFYHEALRVFQAMMSEDLKCDDFTLTSVLHA 290
           +    EAL +   M  ++   D  T  SVL+A
Sbjct: 619 HGHPSEALNLISQMRWKNKPADQSTFRSVLNA 650


>ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [Sorghum bicolor]
           gi|241933759|gb|EES06904.1| hypothetical protein
           SORBIDRAFT_04g021580 [Sorghum bicolor]
          Length = 798

 Score =  103 bits (258), Expect = 1e-20
 Identities = 52/108 (48%), Positives = 67/108 (62%)
 Frame = +3

Query: 9   GAGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGY 188
           G G Q+HCC++KMG+    FL+N L+ FY +  +L     +FD M  +DLVSWNTII  Y
Sbjct: 235 GLGHQLHCCMIKMGLVGKEFLDNCLIGFYGRSGELQLMRNVFDEMNGKDLVSWNTIIQCY 294

Query: 189 VHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
             N  + EA   F+AMM E  +CD+FTL S+LH VT   A   G EIH
Sbjct: 295 AENLCHEEASAHFRAMMFEFAECDEFTLGSILHVVTATGAFGHGMEIH 342



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
 Frame = +3

Query: 3   SFGAGIQMHCCVVKMG-MRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTII 179
           S G G Q+H  V K+G + + LF+ N L+  Y  C+ L  + ++F  +   DLVSW +++
Sbjct: 131 SLGLGRQLHGAVAKLGYVGADLFVANGLVTMYSSCQSLRCAEKVFGSITSPDLVSWTSML 190

Query: 180 TGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
           + Y  N    EAL +F  M  + + CD FTL+  L A + L  + LG ++H
Sbjct: 191 SAYTENGCDAEALMLFMEMARDGIACDAFTLSVALRAASSLGHVGLGHQLH 241



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 34/107 (31%), Positives = 54/107 (50%)
 Frame = +3

Query: 12  AGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYV 191
           AG  +H C++K  M    F+ ++L++ Y KC  L  S  +F          W+  I+G  
Sbjct: 412 AGRMLHACILKSNMNPDSFVTSSLVDMYAKCGALEESNMLFSRTKNPGTAVWSAAISGNC 471

Query: 192 HNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
            N  Y  A+ +F+ M SE ++ ++FT T++L A   L     G EIH
Sbjct: 472 LNGQYGRAVHLFRRMQSEHVQPNEFTYTAILTACMALGDTDSGMEIH 518


>ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 789

 Score =  101 bits (251), Expect = 7e-20
 Identities = 51/106 (48%), Positives = 68/106 (64%)
 Frame = +3

Query: 15  GIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYVH 194
           G Q+HCC++K+G  +S FLEN L+ FY K  +L+   ++FD M  +DLVS NT+I  Y  
Sbjct: 227 GHQLHCCIIKLGFSNSGFLENCLIEFYGKSSELHLMQKVFDDMDDKDLVSSNTVIQCYAD 286

Query: 195 NQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
           N    +AL  F+AMM E  +CD+FTL S+LH VT   A   G EIH
Sbjct: 287 NMCDEQALSHFRAMMFEGSECDEFTLGSILHVVTRRGAFDYGMEIH 332



 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
 Frame = +3

Query: 15  GIQMHCCVVKMG-MRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYV 191
           G Q+HC   KMG + + LF+ N L+  Y  CR L  + ++F+ +   DLVSW ++++GY 
Sbjct: 125 GRQLHCAAAKMGYVGADLFVANGLLTMYASCRSLGCAEKVFNGIATPDLVSWTSMLSGYT 184

Query: 192 HNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
            N  + EA+ +F  M+   ++CD FTL+  L A + L  L LG ++H
Sbjct: 185 ENGCHAEAVMLFVEMVHAGIRCDAFTLSVALRAASSLANLSLGHQLH 231



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/107 (31%), Positives = 56/107 (52%)
 Frame = +3

Query: 12  AGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYV 191
           AG  +H  ++K+ M S  F+ ++L++ Y KC  L  S  +F          W+ +I+G  
Sbjct: 402 AGRMLHAYILKLNMNSDAFVTSSLVDMYAKCGCLEESHLLFSTTKYPGTAEWSAVISGNC 461

Query: 192 HNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
            N  +  AL +F+ M  + ++ ++FT TSVL A   L  +  G EIH
Sbjct: 462 LNGQFERALHLFRRMQLDHVRPNEFTYTSVLTACIDLGDVVGGIEIH 508


>gb|AFW71662.1| hypothetical protein ZEAMMB73_019211 [Zea mays]
          Length = 798

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 50/108 (46%), Positives = 66/108 (61%)
 Frame = +3

Query: 9   GAGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGY 188
           G G Q+HCC++KMG+    FL+N L+ FY +  +L     +FD M  +DLVSWNT+I  Y
Sbjct: 236 GLGHQLHCCMIKMGLVGKEFLDNCLIGFYGRSGELQLMRNVFDEMNGKDLVSWNTVIQCY 295

Query: 189 VHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
             N  + EA   F+AMM E  +CD+FTL S+L  VT   A   G EIH
Sbjct: 296 AENLCHEEASAHFRAMMFEFAECDEFTLGSILQVVTRTGAFGHGMEIH 343



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 34/107 (31%), Positives = 55/107 (51%)
 Frame = +3

Query: 12  AGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYV 191
           AG  +H C++K  M    F+ ++L++ Y KC  L  S  +F          W+  I+G  
Sbjct: 413 AGRMLHACILKSDMNPDSFVTSSLLDMYAKCGALEESNLLFSRTKNPGTAEWSAAISGNC 472

Query: 192 HNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332
            N  Y  A+++F+ M SE ++ ++FT T++L A   L     G EIH
Sbjct: 473 LNGQYGRAVQLFRRMQSEHVQPNEFTYTAILTACMALGDTASGVEIH 519



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
 Frame = +3

Query: 3   SFGAGIQMHCCVVKMG-MRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTII 179
           S   G Q+H  V K+G +   LF+ N L+  Y  C+ L  + ++F  +   DLVSW +++
Sbjct: 130 SLRLGRQLHGAVAKLGYVGVDLFVANGLVTMYSSCQSLPCAEKVFGSIASPDLVSWTSML 189

Query: 180 TGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCL--EALKLGREIH 332
           + Y  N    EAL +F  M    + CD FTL+  L A + L    + LG ++H
Sbjct: 190 SAYTENGRDAEALVLFMEMARGGVACDAFTLSVALRAASSLGHVGVGLGHQLH 242