BLASTX nr result
ID: Coptis24_contig00024524
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00024524 (333 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI28363.3| unnamed protein product [Vitis vinifera] 122 3e-26 ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containi... 122 3e-26 ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [S... 103 1e-20 ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containi... 101 7e-20 gb|AFW71662.1| hypothetical protein ZEAMMB73_019211 [Zea mays] 99 3e-19 >emb|CBI28363.3| unnamed protein product [Vitis vinifera] Length = 930 Score = 122 bits (306), Expect = 3e-26 Identities = 58/106 (54%), Positives = 75/106 (70%) Frame = +3 Query: 15 GIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYVH 194 G Q HC ++KMG S L+LEN+LM+FY KC DL ++F M +++LVSWNT I GYVH Sbjct: 241 GTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVH 300 Query: 195 NQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 N Y EALR+FQ +M E +CDDF+L S+L AV+ L L G+EIH Sbjct: 301 NFHYLEALRIFQILMEEVSQCDDFSLLSILKAVSGLGHLDHGKEIH 346 Score = 73.2 bits (178), Expect = 2e-11 Identities = 41/110 (37%), Positives = 59/110 (53%) Frame = +3 Query: 3 SFGAGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIIT 182 S+G G+ H VVK F+EN L++ Y C L + +F + K DLV W++I++ Sbjct: 138 SYGRGV--HGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVFGGIDKPDLVGWSSILS 195 Query: 183 GYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 GYV N E LR+F M+S ++ D F + VL A T LE G + H Sbjct: 196 GYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWDFGTQAH 245 Score = 60.1 bits (144), Expect = 2e-07 Identities = 31/92 (33%), Positives = 49/92 (53%) Frame = +3 Query: 15 GIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYVH 194 G Q H + K G+ S + N+L+ Y C + +VQ F+LMP++D SW +I++ V Sbjct: 583 GTQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAFNLMPEKDTCSWTSILSARVE 642 Query: 195 NQFYHEALRVFQAMMSEDLKCDDFTLTSVLHA 290 + EAL + M ++ D T SVL+A Sbjct: 643 HGHPSEALNLISQMRWKNKPADQSTFRSVLNA 674 Score = 57.8 bits (138), Expect = 9e-07 Identities = 27/89 (30%), Positives = 53/89 (59%) Frame = +3 Query: 66 FLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYVHNQFYHEALRVFQAMMSE 245 F+ +L+ + L ++ ++F + + D W+ +I+G+ N + EAL++F+ M + Sbjct: 399 FIMTSLLKWCSLESSLETAKRVFTRVEQPDTAPWSALISGHSWNGCFAEALKLFRKMQFD 458 Query: 246 DLKCDDFTLTSVLHAVTCLEALKLGREIH 332 +K ++FT TSV+ A LE L+ G+E+H Sbjct: 459 GIKANEFTFTSVILACLALENLRKGKELH 487 >ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera] Length = 906 Score = 122 bits (306), Expect = 3e-26 Identities = 58/106 (54%), Positives = 75/106 (70%) Frame = +3 Query: 15 GIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYVH 194 G Q HC ++KMG S L+LEN+LM+FY KC DL ++F M +++LVSWNT I GYVH Sbjct: 182 GTQAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVH 241 Query: 195 NQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 N Y EALR+FQ +M E +CDDF+L S+L AV+ L L G+EIH Sbjct: 242 NFHYLEALRIFQILMEEVSQCDDFSLLSILKAVSGLGHLDHGKEIH 287 Score = 74.7 bits (182), Expect = 7e-12 Identities = 33/110 (30%), Positives = 67/110 (60%) Frame = +3 Query: 3 SFGAGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIIT 182 S +G H ++K+ ++S ++ ++L++ Y KC ++ ++F + + D W+ +I+ Sbjct: 354 SLESGKMFHSLIIKLDLKSDSYVLSSLIDMYSKCGIWEAAKRVFTRVEQPDTAPWSALIS 413 Query: 183 GYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 G+ N + EAL++F+ M + +K ++FT TSV+ A LE L+ G+E+H Sbjct: 414 GHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILACLALENLRKGKELH 463 Score = 73.2 bits (178), Expect = 2e-11 Identities = 41/110 (37%), Positives = 59/110 (53%) Frame = +3 Query: 3 SFGAGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIIT 182 S+G G+ H VVK F+EN L++ Y C L + +F + K DLV W++I++ Sbjct: 79 SYGRGV--HGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVFGGIDKPDLVGWSSILS 136 Query: 183 GYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 GYV N E LR+F M+S ++ D F + VL A T LE G + H Sbjct: 137 GYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWDFGTQAH 186 Score = 60.1 bits (144), Expect = 2e-07 Identities = 31/92 (33%), Positives = 49/92 (53%) Frame = +3 Query: 15 GIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYVH 194 G Q H + K G+ S + N+L+ Y C + +VQ F+LMP++D SW +I++ V Sbjct: 559 GTQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAFNLMPEKDTCSWTSILSARVE 618 Query: 195 NQFYHEALRVFQAMMSEDLKCDDFTLTSVLHA 290 + EAL + M ++ D T SVL+A Sbjct: 619 HGHPSEALNLISQMRWKNKPADQSTFRSVLNA 650 >ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [Sorghum bicolor] gi|241933759|gb|EES06904.1| hypothetical protein SORBIDRAFT_04g021580 [Sorghum bicolor] Length = 798 Score = 103 bits (258), Expect = 1e-20 Identities = 52/108 (48%), Positives = 67/108 (62%) Frame = +3 Query: 9 GAGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGY 188 G G Q+HCC++KMG+ FL+N L+ FY + +L +FD M +DLVSWNTII Y Sbjct: 235 GLGHQLHCCMIKMGLVGKEFLDNCLIGFYGRSGELQLMRNVFDEMNGKDLVSWNTIIQCY 294 Query: 189 VHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 N + EA F+AMM E +CD+FTL S+LH VT A G EIH Sbjct: 295 AENLCHEEASAHFRAMMFEFAECDEFTLGSILHVVTATGAFGHGMEIH 342 Score = 76.6 bits (187), Expect = 2e-12 Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 1/111 (0%) Frame = +3 Query: 3 SFGAGIQMHCCVVKMG-MRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTII 179 S G G Q+H V K+G + + LF+ N L+ Y C+ L + ++F + DLVSW +++ Sbjct: 131 SLGLGRQLHGAVAKLGYVGADLFVANGLVTMYSSCQSLRCAEKVFGSITSPDLVSWTSML 190 Query: 180 TGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 + Y N EAL +F M + + CD FTL+ L A + L + LG ++H Sbjct: 191 SAYTENGCDAEALMLFMEMARDGIACDAFTLSVALRAASSLGHVGLGHQLH 241 Score = 66.2 bits (160), Expect = 3e-09 Identities = 34/107 (31%), Positives = 54/107 (50%) Frame = +3 Query: 12 AGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYV 191 AG +H C++K M F+ ++L++ Y KC L S +F W+ I+G Sbjct: 412 AGRMLHACILKSNMNPDSFVTSSLVDMYAKCGALEESNMLFSRTKNPGTAVWSAAISGNC 471 Query: 192 HNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 N Y A+ +F+ M SE ++ ++FT T++L A L G EIH Sbjct: 472 LNGQYGRAVHLFRRMQSEHVQPNEFTYTAILTACMALGDTDSGMEIH 518 >ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39530-like [Brachypodium distachyon] Length = 789 Score = 101 bits (251), Expect = 7e-20 Identities = 51/106 (48%), Positives = 68/106 (64%) Frame = +3 Query: 15 GIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYVH 194 G Q+HCC++K+G +S FLEN L+ FY K +L+ ++FD M +DLVS NT+I Y Sbjct: 227 GHQLHCCIIKLGFSNSGFLENCLIEFYGKSSELHLMQKVFDDMDDKDLVSSNTVIQCYAD 286 Query: 195 NQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 N +AL F+AMM E +CD+FTL S+LH VT A G EIH Sbjct: 287 NMCDEQALSHFRAMMFEGSECDEFTLGSILHVVTRRGAFDYGMEIH 332 Score = 85.1 bits (209), Expect = 5e-15 Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 1/107 (0%) Frame = +3 Query: 15 GIQMHCCVVKMG-MRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYV 191 G Q+HC KMG + + LF+ N L+ Y CR L + ++F+ + DLVSW ++++GY Sbjct: 125 GRQLHCAAAKMGYVGADLFVANGLLTMYASCRSLGCAEKVFNGIATPDLVSWTSMLSGYT 184 Query: 192 HNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 N + EA+ +F M+ ++CD FTL+ L A + L L LG ++H Sbjct: 185 ENGCHAEAVMLFVEMVHAGIRCDAFTLSVALRAASSLANLSLGHQLH 231 Score = 62.8 bits (151), Expect = 3e-08 Identities = 34/107 (31%), Positives = 56/107 (52%) Frame = +3 Query: 12 AGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYV 191 AG +H ++K+ M S F+ ++L++ Y KC L S +F W+ +I+G Sbjct: 402 AGRMLHAYILKLNMNSDAFVTSSLVDMYAKCGCLEESHLLFSTTKYPGTAEWSAVISGNC 461 Query: 192 HNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 N + AL +F+ M + ++ ++FT TSVL A L + G EIH Sbjct: 462 LNGQFERALHLFRRMQLDHVRPNEFTYTSVLTACIDLGDVVGGIEIH 508 >gb|AFW71662.1| hypothetical protein ZEAMMB73_019211 [Zea mays] Length = 798 Score = 99.4 bits (246), Expect = 3e-19 Identities = 50/108 (46%), Positives = 66/108 (61%) Frame = +3 Query: 9 GAGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGY 188 G G Q+HCC++KMG+ FL+N L+ FY + +L +FD M +DLVSWNT+I Y Sbjct: 236 GLGHQLHCCMIKMGLVGKEFLDNCLIGFYGRSGELQLMRNVFDEMNGKDLVSWNTVIQCY 295 Query: 189 VHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 N + EA F+AMM E +CD+FTL S+L VT A G EIH Sbjct: 296 AENLCHEEASAHFRAMMFEFAECDEFTLGSILQVVTRTGAFGHGMEIH 343 Score = 65.9 bits (159), Expect = 3e-09 Identities = 34/107 (31%), Positives = 55/107 (51%) Frame = +3 Query: 12 AGIQMHCCVVKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIITGYV 191 AG +H C++K M F+ ++L++ Y KC L S +F W+ I+G Sbjct: 413 AGRMLHACILKSDMNPDSFVTSSLLDMYAKCGALEESNLLFSRTKNPGTAEWSAAISGNC 472 Query: 192 HNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCLEALKLGREIH 332 N Y A+++F+ M SE ++ ++FT T++L A L G EIH Sbjct: 473 LNGQYGRAVQLFRRMQSEHVQPNEFTYTAILTACMALGDTASGVEIH 519 Score = 64.3 bits (155), Expect = 1e-08 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 3/113 (2%) Frame = +3 Query: 3 SFGAGIQMHCCVVKMG-MRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTII 179 S G Q+H V K+G + LF+ N L+ Y C+ L + ++F + DLVSW +++ Sbjct: 130 SLRLGRQLHGAVAKLGYVGVDLFVANGLVTMYSSCQSLPCAEKVFGSIASPDLVSWTSML 189 Query: 180 TGYVHNQFYHEALRVFQAMMSEDLKCDDFTLTSVLHAVTCL--EALKLGREIH 332 + Y N EAL +F M + CD FTL+ L A + L + LG ++H Sbjct: 190 SAYTENGRDAEALVLFMEMARGGVACDAFTLSVALRAASSLGHVGVGLGHQLH 242