BLASTX nr result

ID: Coptis24_contig00024230 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024230
         (527 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40706.3| unnamed protein product [Vitis vinifera]              172   3e-41
ref|XP_002270022.1| PREDICTED: putative acyl-CoA synthetase YngI...   172   3e-41
ref|XP_002307787.1| predicted protein [Populus trichocarpa] gi|2...   172   3e-41
ref|XP_003631909.1| PREDICTED: LOW QUALITY PROTEIN: medium-chain...   170   1e-40
emb|CBI38405.3| unnamed protein product [Vitis vinifera]              170   1e-40

>emb|CBI40706.3| unnamed protein product [Vitis vinifera]
          Length = 411

 Score =  172 bits (436), Expect = 3e-41
 Identities = 79/108 (73%), Positives = 95/108 (87%)
 Frame = -2

Query: 328 SEKPMEGLFQCPANYVPLSPISFLQRAGIVYRDRVSVIYGSANYTWKETLERCLRLASAL 149
           S + MEG+ +C AN+VPLSPISFL+R+  VYRDRV+++YG   +TW++TLERC RLASA+
Sbjct: 6   SVESMEGMIRCSANHVPLSPISFLERSASVYRDRVAIVYGRVKFTWRDTLERCTRLASAI 65

Query: 148 THLGISRGDVVATLVPNVPAMYELHFGVPMAGAVLCTLNIRYNSEMVS 5
           THLGISRGDVVA L PN+PAMYELHFGVPMAGAVLCTLNIR++S MVS
Sbjct: 66  THLGISRGDVVAALAPNIPAMYELHFGVPMAGAVLCTLNIRHDSAMVS 113


>ref|XP_002270022.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Vitis vinifera]
          Length = 566

 Score =  172 bits (436), Expect = 3e-41
 Identities = 79/108 (73%), Positives = 95/108 (87%)
 Frame = -2

Query: 328 SEKPMEGLFQCPANYVPLSPISFLQRAGIVYRDRVSVIYGSANYTWKETLERCLRLASAL 149
           S + MEG+ +C AN+VPLSPISFL+R+  VYRDRV+++YG   +TW++TLERC RLASA+
Sbjct: 6   SVESMEGMIRCSANHVPLSPISFLERSASVYRDRVAIVYGRVKFTWRDTLERCTRLASAI 65

Query: 148 THLGISRGDVVATLVPNVPAMYELHFGVPMAGAVLCTLNIRYNSEMVS 5
           THLGISRGDVVA L PN+PAMYELHFGVPMAGAVLCTLNIR++S MVS
Sbjct: 66  THLGISRGDVVAALAPNIPAMYELHFGVPMAGAVLCTLNIRHDSAMVS 113


>ref|XP_002307787.1| predicted protein [Populus trichocarpa] gi|222857236|gb|EEE94783.1|
           predicted protein [Populus trichocarpa]
          Length = 552

 Score =  172 bits (436), Expect = 3e-41
 Identities = 81/104 (77%), Positives = 91/104 (87%)
 Frame = -2

Query: 316 MEGLFQCPANYVPLSPISFLQRAGIVYRDRVSVIYGSANYTWKETLERCLRLASALTHLG 137
           MEG+ +C ANYVPL+PISFL+R+ IVYRDRVSV YG   YTWKET ERC+RLASAL HLG
Sbjct: 1   MEGMVKCSANYVPLTPISFLERSAIVYRDRVSVAYGDIKYTWKETHERCVRLASALAHLG 60

Query: 136 ISRGDVVATLVPNVPAMYELHFGVPMAGAVLCTLNIRYNSEMVS 5
           IS GDVVA L PN+PAMYELHFGVPMAGAVLCTLN+R++S MVS
Sbjct: 61  ISPGDVVAALAPNIPAMYELHFGVPMAGAVLCTLNVRHDSSMVS 104


>ref|XP_003631909.1| PREDICTED: LOW QUALITY PROTEIN: medium-chain-fatty-acid--CoA
           ligase-like [Vitis vinifera]
          Length = 419

 Score =  170 bits (430), Expect = 1e-40
 Identities = 84/117 (71%), Positives = 92/117 (78%), Gaps = 6/117 (5%)
 Frame = -2

Query: 337 HFSSE------KPMEGLFQCPANYVPLSPISFLQRAGIVYRDRVSVIYGSANYTWKETLE 176
           HFS +      K  EGL +CP N VPLSPI+FL+R+   YRDR SV+YGS  YTW ET E
Sbjct: 32  HFSGDIGPGSWKSTEGLVRCPVNDVPLSPITFLERSATAYRDRTSVVYGSVKYTWSETQE 91

Query: 175 RCLRLASALTHLGISRGDVVATLVPNVPAMYELHFGVPMAGAVLCTLNIRYNSEMVS 5
           RCL+LASALT LGISRGDVVA L PNVPAMYELHFGVPMAGAVLCTLN R+NS MVS
Sbjct: 92  RCLKLASALTQLGISRGDVVAVLAPNVPAMYELHFGVPMAGAVLCTLNTRHNSAMVS 148


>emb|CBI38405.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  170 bits (430), Expect = 1e-40
 Identities = 84/117 (71%), Positives = 92/117 (78%), Gaps = 6/117 (5%)
 Frame = -2

Query: 337 HFSSE------KPMEGLFQCPANYVPLSPISFLQRAGIVYRDRVSVIYGSANYTWKETLE 176
           HFS +      K  EGL +CP N VPLSPI+FL+R+   YRDR SV+YGS  YTW ET E
Sbjct: 32  HFSGDIGPGSWKSTEGLVRCPVNDVPLSPITFLERSATAYRDRTSVVYGSVKYTWSETQE 91

Query: 175 RCLRLASALTHLGISRGDVVATLVPNVPAMYELHFGVPMAGAVLCTLNIRYNSEMVS 5
           RCL+LASALT LGISRGDVVA L PNVPAMYELHFGVPMAGAVLCTLN R+NS MVS
Sbjct: 92  RCLKLASALTQLGISRGDVVAVLAPNVPAMYELHFGVPMAGAVLCTLNTRHNSAMVS 148


Top