BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024033
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...    82   6e-14
ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|2...    78   7e-13
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    74   1e-11
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containi...    67   2e-09

>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 42/100 (42%), Positives = 63/100 (63%)
 Frame = +1

Query: 1   YSTVLGNFKAAKMINDANALNEYFTKVTRDSASNAIVKSVAEVVLESDCDDNVKKKLWEL 180
           Y T+LG FK  KM ++  AL  ++ ++ +++A + +VK V E+V  S     V+KKL EL
Sbjct: 166 YLTILGVFKKGKMASEEVALTHFYNRMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGEL 225

Query: 181 KVTLSESIVLRILRALGQCPLKALCVFRWMEEDMGYSHSA 300
           K + S++ VL +LR L   PLKAL  F+W+ E  GY HS+
Sbjct: 226 KNSFSDNFVLHVLRELRGYPLKALRFFQWVGECPGYEHSS 265


>ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|222868635|gb|EEF05766.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 34/99 (34%), Positives = 63/99 (63%)
 Frame = +1

Query: 1   YSTVLGNFKAAKMINDANALNEYFTKVTRDSASNAIVKSVAEVVLESDCDDNVKKKLWEL 180
           Y T++G  K  KM ND  AL  ++ ++  ++A + +VK V  ++LE + +  V+KKL  +
Sbjct: 13  YLTIMGICKKEKMANDVAALKHFYDRMIDENAKDNVVKDVVRIILEREWNKEVEKKLVGM 72

Query: 181 KVTLSESIVLRILRALGQCPLKALCVFRWMEEDMGYSHS 297
           ++ L+++ V+R+L+ L   P+KAL  F+W++   GY H+
Sbjct: 73  RIVLTDNFVIRVLKELRSYPVKALRFFQWVDRREGYQHN 111


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 35/99 (35%), Positives = 60/99 (60%)
 Frame = +1

Query: 1   YSTVLGNFKAAKMINDANALNEYFTKVTRDSASNAIVKSVAEVVLESDCDDNVKKKLWEL 180
           Y T+LG  + +K   DA  L  ++ ++ + +A +++V+ V ++VL SD  ++V  KL EL
Sbjct: 159 YKTILGVLRKSKKAADATGLTHFYNRMLQQNAMDSVVQKVVDIVLGSDWSNDVPGKLEEL 218

Query: 181 KVTLSESIVLRILRALGQCPLKALCVFRWMEEDMGYSHS 297
            + LS++ V+R+L+ L   PLKAL  F W+     Y H+
Sbjct: 219 GIALSDNFVIRVLKELRNSPLKALSFFHWVGCRPDYDHN 257


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 32/98 (32%), Positives = 59/98 (60%)
 Frame = +1

Query: 1   YSTVLGNFKAAKMINDANALNEYFTKVTRDSASNAIVKSVAEVVLESDCDDNVKKKLWEL 180
           Y T+   FK  KM +D+ AL  ++ ++  ++A  ++V +V  ++  S+  D V  +L +L
Sbjct: 165 YLTISVGFKREKMDSDSVALTHFYNRMLEENAMQSVVSNVVGIISRSEWGDEVVGELAKL 224

Query: 181 KVTLSESIVLRILRALGQCPLKALCVFRWMEEDMGYSH 294
           ++ LS++ V+R+L+ L + PLKA   F W+ +  GY H
Sbjct: 225 EIQLSDNFVIRVLKELRKTPLKAYKFFHWVGKQSGYEH 262


>ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 30/98 (30%), Positives = 54/98 (55%)
 Frame = +1

Query: 1   YSTVLGNFKAAKMINDANALNEYFTKVTRDSASNAIVKSVAEVVLESDCDDNVKKKLWEL 180
           Y  +L  FK   M  D  +L  ++++  +++A   +V  V +++  S+  D V   L +L
Sbjct: 169 YFPILAGFKRKNMNKDRVSLTRFYSQGIQENAMQIVVTKVVDIISGSEWGDEVMSNLAKL 228

Query: 181 KVTLSESIVLRILRALGQCPLKALCVFRWMEEDMGYSH 294
           ++ +S++ V R+L+ L  CPLKA   F W+ +  GY H
Sbjct: 229 EIRMSDNFVTRVLKELRNCPLKAYEFFNWVGKQSGYEH 266