BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023873
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              135   5e-30
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   135   5e-30
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   131   7e-29
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   131   7e-29
ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|2...   122   2e-26

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  135 bits (339), Expect = 5e-30
 Identities = 66/125 (52%), Positives = 90/125 (72%), Gaps = 3/125 (2%)
 Frame = +1

Query: 1    PRKCFERAAEKCHADALSGIVASCSWGKHVALGTGTPFEILWNKNEMGLDQDGVIDVYDF 180
            PRKCFE+A+EKCH D+LS IVASCSWGKHV +GTG+ F++LW+  E+G  QDG ID+Y F
Sbjct: 1253 PRKCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSF 1312

Query: 181  LQLVRMDPIG-DLNTSCLGRDTDELI-ENGVAELSLSPERNFDYSKPTFDD-AELQCKFD 351
            L LVR    G + +T+CLG + ++LI E+   EL +SPE + ++ KP F+D AE Q  ++
Sbjct: 1313 LHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWE 1372

Query: 352  EHQVG 366
             H  G
Sbjct: 1373 NHVPG 1377


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  135 bits (339), Expect = 5e-30
 Identities = 66/125 (52%), Positives = 90/125 (72%), Gaps = 3/125 (2%)
 Frame = +1

Query: 1    PRKCFERAAEKCHADALSGIVASCSWGKHVALGTGTPFEILWNKNEMGLDQDGVIDVYDF 180
            PRKCFE+A+EKCH D+LS IVASCSWGKHV +GTG+ F++LW+  E+G  QDG ID+Y F
Sbjct: 1193 PRKCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSF 1252

Query: 181  LQLVRMDPIG-DLNTSCLGRDTDELI-ENGVAELSLSPERNFDYSKPTFDD-AELQCKFD 351
            L LVR    G + +T+CLG + ++LI E+   EL +SPE + ++ KP F+D AE Q  ++
Sbjct: 1253 LHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWE 1312

Query: 352  EHQVG 366
             H  G
Sbjct: 1313 NHVPG 1317


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  131 bits (329), Expect = 7e-29
 Identities = 60/111 (54%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
 Frame = +1

Query: 1    PRKCFERAAEKCHADALSGIVASCSWGKHVALGTGTPFEILWNKNEMGLDQDGVIDVYDF 180
            PRKCFE+AAEKCH D+LS IVASCSWGKHVA+GTG+ F+ILW++ E+G  QD V+DVY+F
Sbjct: 1188 PRKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNF 1247

Query: 181  LQLVRMDPIGDLNTSCLGRDTDE-LIENGVAELSLSPERNFDYSKPTFDDA 330
            L +VR     +  ++CLG + ++ ++E+   EL+LSPE      KP F+D+
Sbjct: 1248 LHMVRSGKSEEPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDS 1298


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  131 bits (329), Expect = 7e-29
 Identities = 60/111 (54%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
 Frame = +1

Query: 1    PRKCFERAAEKCHADALSGIVASCSWGKHVALGTGTPFEILWNKNEMGLDQDGVIDVYDF 180
            PRKCFE+AAEKCH D+LS IVASCSWGKHVA+GTG+ F+ILW++ E+G  QD V+DVY+F
Sbjct: 1248 PRKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNF 1307

Query: 181  LQLVRMDPIGDLNTSCLGRDTDE-LIENGVAELSLSPERNFDYSKPTFDDA 330
            L +VR     +  ++CLG + ++ ++E+   EL+LSPE      KP F+D+
Sbjct: 1308 LHMVRSGKSEEPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDS 1358


>ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|222841358|gb|EEE78905.1|
           predicted protein [Populus trichocarpa]
          Length = 1020

 Score =  122 bits (307), Expect = 2e-26
 Identities = 61/115 (53%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
 Frame = +1

Query: 1   PRKCFERAAEKCHADALSGIVASCSWGKHVALGTGTPFEILWNKNEMGLDQDGVIDVYDF 180
           PRKCFE+AAEKCH D+LS IVASC+WGKHV +GTG+ F++LW+  E  L+ +G +DVY F
Sbjct: 294 PRKCFEKAAEKCHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSF 353

Query: 181 LQLVRMDPIGDLN-TSCLGRDTDELIENGVAELSLSPERNFDYSKPTFDD-AELQ 339
           L +VR    G+ + T+CLG + D+L+     + +LSPE N    KPTF+D AE Q
Sbjct: 354 LNMVRSTAGGEESVTACLGAEVDDLMLED-EDWNLSPEHNSSSDKPTFEDSAEFQ 407