BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023829
         (734 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containi...   290   2e-76
ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|2...   288   6e-76
ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containi...   267   2e-69
ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containi...   267   2e-69
ref|NP_187126.1| pentatricopeptide repeat-containing protein [Ar...   226   5e-57

>ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  290 bits (742), Expect = 2e-76
 Identities = 140/223 (62%), Positives = 170/223 (76%), Gaps = 1/223 (0%)
 Frame = -2

Query: 733  DVAVWTAMIAGLAFHGHGLHALKLFQEMQDISRPNRVTFIAILTACSHGGMIDQGLKIFN 554
            DV VWT MI G AFHG+G  AL+LF EMQ+   PN+VTF+A+LTACSH G + QGL+IFN
Sbjct: 427  DVTVWTTMITGFAFHGYGSKALQLFYEMQEYVMPNQVTFVAVLTACSHSGFVSQGLRIFN 486

Query: 553  SMID-YGIEPGVEHYGCLVDLLARAGRVSEAKSIIEKMPMNPSGSIWGTLLNVGKANGNV 377
            SM + YGIEPGVEHYGCLVDLL R+GR SE K +IE MPM PS SIWG +L+  +A GN+
Sbjct: 487  SMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNI 546

Query: 376  ELAETAXXXXXXXXXXXEGGYVLLSNVYAACGRWSYSHKIRELMESRGLKKIAGCSSLVV 197
            E+AE A           EGGYVLLSN+YA  GRW +S KIRE+MESRG+KK AGCSS+VV
Sbjct: 547  EIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVV 606

Query: 196  DGDIHEFMAADKRHPRWLEVYFILSVLNKEMKLGANVVSDFVE 68
            DG IHEF+AADKRHPRW+E+  IL  L  EMKLG + + ++++
Sbjct: 607  DGIIHEFVAADKRHPRWIEIQSILFCLKSEMKLGTDFLLEYLQ 649


>ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|222838210|gb|EEE76575.1|
            predicted protein [Populus trichocarpa]
          Length = 580

 Score =  288 bits (738), Expect = 6e-76
 Identities = 138/216 (63%), Positives = 170/216 (78%)
 Frame = -2

Query: 733  DVAVWTAMIAGLAFHGHGLHALKLFQEMQDISRPNRVTFIAILTACSHGGMIDQGLKIFN 554
            DV VWT MI GLAFHG+G  AL+LF EMQ+   P+ VTF+++L+ACSH G++DQG+K+F+
Sbjct: 363  DVTVWTTMITGLAFHGYGSKALELFSEMQEDVSPDDVTFVSVLSACSHSGLVDQGIKVFS 422

Query: 553  SMIDYGIEPGVEHYGCLVDLLARAGRVSEAKSIIEKMPMNPSGSIWGTLLNVGKANGNVE 374
            SM DYGIEPGVEHYGCLVDLLAR+GR+SEAK II++MPM PS SIWG +LN  +A G+VE
Sbjct: 423  SMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVE 482

Query: 373  LAETAXXXXXXXXXXXEGGYVLLSNVYAACGRWSYSHKIRELMESRGLKKIAGCSSLVVD 194
            LAE A           EGGY LLSN+YAA GRWSYS KIRE MESRG+KK AGCSS+VVD
Sbjct: 483  LAEIASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVD 542

Query: 193  GDIHEFMAADKRHPRWLEVYFILSVLNKEMKLGANV 86
            G +H F++ADK HP W+++  IL+ L  EMK GA++
Sbjct: 543  GVVHNFISADKCHPGWVDISSILNCLKNEMKPGADL 578


>ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  267 bits (682), Expect = 2e-69
 Identities = 130/219 (59%), Positives = 163/219 (74%), Gaps = 1/219 (0%)
 Frame = -2

Query: 733  DVAVWTAMIAGLAFHGHGLHALKLFQEMQDISRPNRVTFIAILTACSHGGMIDQGLKIFN 554
            DV  WT MI G AFHG G  AL+LF  MQ  ++PN VTF+++L ACSH G++D+GLKIF+
Sbjct: 361  DVTTWTTMITGFAFHGFGNKALELFSVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFS 420

Query: 553  SMID-YGIEPGVEHYGCLVDLLARAGRVSEAKSIIEKMPMNPSGSIWGTLLNVGKANGNV 377
            SM   Y IEPGVEHYGCLVDLL R+GR+ +A  +IEKMPM PS SIWG +L+  + + N+
Sbjct: 421  SMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNM 480

Query: 376  ELAETAXXXXXXXXXXXEGGYVLLSNVYAACGRWSYSHKIRELMESRGLKKIAGCSSLVV 197
            ELAE A           EGGY+LLSNVYA CGRWSYS  IRE+M SRG+KKIAGCSS+ V
Sbjct: 481  ELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAV 540

Query: 196  DGDIHEFMAADKRHPRWLEVYFILSVLNKEMKLGANVVS 80
            DG +H+F A++K+HPRW+++  ILS L  EM+L A+V S
Sbjct: 541  DGMVHDFTASNKQHPRWMDICSILSFLTNEMRLEADVPS 579


>ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  267 bits (682), Expect = 2e-69
 Identities = 130/219 (59%), Positives = 163/219 (74%), Gaps = 1/219 (0%)
 Frame = -2

Query: 733  DVAVWTAMIAGLAFHGHGLHALKLFQEMQDISRPNRVTFIAILTACSHGGMIDQGLKIFN 554
            DV  WT MI G AFHG G  AL+LF  MQ  ++PN VTF+++L ACSH G++D+GLKIF+
Sbjct: 426  DVTTWTTMITGFAFHGFGNKALELFSVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFS 485

Query: 553  SMID-YGIEPGVEHYGCLVDLLARAGRVSEAKSIIEKMPMNPSGSIWGTLLNVGKANGNV 377
            SM   Y IEPGVEHYGCLVDLL R+GR+ +A  +IEKMPM PS SIWG +L+  + + N+
Sbjct: 486  SMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNM 545

Query: 376  ELAETAXXXXXXXXXXXEGGYVLLSNVYAACGRWSYSHKIRELMESRGLKKIAGCSSLVV 197
            ELAE A           EGGY+LLSNVYA CGRWSYS  IRE+M SRG+KKIAGCSS+ V
Sbjct: 546  ELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAV 605

Query: 196  DGDIHEFMAADKRHPRWLEVYFILSVLNKEMKLGANVVS 80
            DG +H+F A++K+HPRW+++  ILS L  EM+L A+V S
Sbjct: 606  DGMVHDFTASNKQHPRWMDICSILSFLTNEMRLEADVPS 644


>ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g04750, mitochondrial; Flags: Precursor
            gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein
            [Arabidopsis thaliana] gi|332640610|gb|AEE74131.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 661

 Score =  226 bits (575), Expect = 5e-57
 Identities = 118/215 (54%), Positives = 150/215 (69%), Gaps = 4/215 (1%)
 Frame = -2

Query: 733  DVAVWTAMIAGLAFHGHGLHALKLFQEMQDIS-RPNRVTFIAILTACSHGGMIDQGLKIF 557
            DVA+WT+MI GLAFHG+G  AL+LF  MQ+    PN VT +A+LTACSH G++++GL +F
Sbjct: 433  DVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVF 492

Query: 556  NSMID-YGIEPGVEHYGCLVDLLARAGRVSEAKSIIEK-MPMNPSGSIWGTLLNVGKANG 383
            N M D +G +P  EHYG LVDLL RAGRV EAK I++K MPM PS S+WG++L+  +   
Sbjct: 493  NHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGE 552

Query: 382  NVELAETAXXXXXXXXXXXEGGYVLLSNVYAACGRWSYSHKIRELMESRGLKKIAGCSSL 203
            ++E AE A           EGGYVLLSN+YA  GRW YS K RE ME+RG+KK AG SS+
Sbjct: 553  DIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSV 612

Query: 202  VVDGDIHEFMAADKR-HPRWLEVYFILSVLNKEMK 101
            V    +H F+AA+K+ HPRW E+  IL  L  EMK
Sbjct: 613  VGVEGLHRFVAAEKQNHPRWTEIKRILQHLYNEMK 647