BLASTX nr result
ID: Coptis24_contig00023821
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00023821
(411 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat... 120 1e-25
emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera] 120 1e-25
ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat... 91 1e-21
ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containi... 107 1e-21
ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat... 86 1e-19
>ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 120 bits (300), Expect = 1e-25
Identities = 58/90 (64%), Positives = 72/90 (80%)
Frame = +2
Query: 38 LIRDSVALAQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYAL 217
++RD+ ALA VIQTYAKTK+L +GKQLHA LI Y PC F++NHL+NMYSKC +L++AL
Sbjct: 1 MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60
Query: 218 TLFDKMPQRNIVSWTAMISAYAQRRYHTEA 307
LFD MPQRN+VSWTAMIS +Q +EA
Sbjct: 61 KLFDTMPQRNLVSWTAMISGLSQNSKFSEA 90
Score = 64.7 bits (156), Expect = 7e-09
Identities = 35/110 (31%), Positives = 59/110 (53%)
Frame = +2
Query: 56 ALAQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALTLFDKM 235
A + I+ A + GKQ+H ++ +FV ++L +MYSKC + A +F++M
Sbjct: 108 AFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM 167
Query: 236 PQRNIVSWTAMISAYAQRRYHTEAWLLFNQMLKSEIWQVHSLMNSLMQLC 385
P ++ VSWTAMI Y++ EA L F +M+ E+ ++ S + C
Sbjct: 168 PCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGAC 217
Score = 59.3 bits (142), Expect = 3e-07
Identities = 28/90 (31%), Positives = 52/90 (57%)
Frame = +2
Query: 62 AQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALTLFDKMPQ 241
+ +I+ A L +G QLHA +++IN+ FVS+ L++MY KC L A+ FD++
Sbjct: 313 SSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGD 372
Query: 242 RNIVSWTAMISAYAQRRYHTEAWLLFNQML 331
++W +++S + Q +A +F +M+
Sbjct: 373 PTEIAWNSLVSVFGQHGLGKDAIKIFERMV 402
>emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 120 bits (300), Expect = 1e-25
Identities = 58/90 (64%), Positives = 72/90 (80%)
Frame = +2
Query: 38 LIRDSVALAQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYAL 217
++RD+ ALA VIQTYAKTK+L +GKQLHA LI Y PC F++NHL+NMYSKC +L++AL
Sbjct: 1 MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60
Query: 218 TLFDKMPQRNIVSWTAMISAYAQRRYHTEA 307
LFD MPQRN+VSWTAMIS +Q +EA
Sbjct: 61 KLFDTMPQRNLVSWTAMISGLSQNSKFSEA 90
Score = 64.7 bits (156), Expect = 7e-09
Identities = 35/110 (31%), Positives = 59/110 (53%)
Frame = +2
Query: 56 ALAQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALTLFDKM 235
A + I+ A + GKQ+H ++ +FV ++L +MYSKC + A +F++M
Sbjct: 108 AFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM 167
Query: 236 PQRNIVSWTAMISAYAQRRYHTEAWLLFNQMLKSEIWQVHSLMNSLMQLC 385
P ++ VSWTAMI Y++ EA L F +M+ E+ ++ S + C
Sbjct: 168 PCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGAC 217
Score = 59.7 bits (143), Expect = 2e-07
Identities = 28/90 (31%), Positives = 52/90 (57%)
Frame = +2
Query: 62 AQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALTLFDKMPQ 241
+ +I+ A L +G QLHA +++IN+ FVS+ L++MY KC L +A+ FD++
Sbjct: 313 SSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGD 372
Query: 242 RNIVSWTAMISAYAQRRYHTEAWLLFNQML 331
++W +++S + Q +A F +M+
Sbjct: 373 PTEIAWNSLVSVFGQHGLGKDAIKFFERMV 402
>ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 90.9 bits (224), Expect(2) = 1e-21
Identities = 41/90 (45%), Positives = 63/90 (70%)
Frame = +2
Query: 68 VIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALTLFDKMPQRN 247
V+ + + + +G+++HAH+I+ +Y PC+++ L+ Y KC L A +FD MP+RN
Sbjct: 64 VLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERN 123
Query: 248 IVSWTAMISAYAQRRYHTEAWLLFNQMLKS 337
+VSWTAMISAY+QR Y ++A LF QML+S
Sbjct: 124 VVSWTAMISAYSQRGYASQALSLFVQMLRS 153
Score = 37.4 bits (85), Expect(2) = 1e-21
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 346 AGTQPNEFTYATVLTCCSGDRG 411
+GT+PNEFT+ATVLT C G G
Sbjct: 153 SGTEPNEFTFATVLTSCIGSSG 174
Score = 70.5 bits (171), Expect(2) = 2e-11
Identities = 34/89 (38%), Positives = 59/89 (66%)
Frame = +2
Query: 62 AQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALTLFDKMPQ 241
A V+ + + V G+Q+H+H+I++NY+ ++V + LL+MY+K K++ A +F +P+
Sbjct: 163 ATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPE 222
Query: 242 RNIVSWTAMISAYAQRRYHTEAWLLFNQM 328
R++VS TA+IS YAQ EA LF ++
Sbjct: 223 RDVVSCTAIISGYAQLGLDEEALELFRRL 251
Score = 22.7 bits (47), Expect(2) = 2e-11
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 349 GTQPNEFTYATVLTCCSG 402
G Q N TY +VLT SG
Sbjct: 255 GMQSNYVTYTSVLTALSG 272
Score = 68.6 bits (166), Expect = 5e-10
Identities = 33/93 (35%), Positives = 50/93 (53%)
Frame = +2
Query: 53 VALAQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALTLFDK 232
V V+ + L GKQ+H HL+R + + N L++MYSKC L YA +FD
Sbjct: 261 VTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDT 320
Query: 233 MPQRNIVSWTAMISAYAQRRYHTEAWLLFNQML 331
+ +R ++SW AM+ Y++ E LFN M+
Sbjct: 321 LHERTVISWNAMLVGYSKHGEGREVLELFNLMI 353
>ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 751
Score = 107 bits (267), Expect = 1e-21
Identities = 57/116 (49%), Positives = 79/116 (68%), Gaps = 1/116 (0%)
Frame = +2
Query: 41 IRDSVALAQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALT 220
+ D+ +A +IQTYA+TK+L KGKQLHA LIR P F+SNH LN+YSKC +L+Y +
Sbjct: 72 LSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIK 131
Query: 221 LFDKMPQRNIVSWTAMISAYAQRRYHTEAWLLFNQM-LKSEIWQVHSLMNSLMQLC 385
LFDKM QRN+VSWT++I+ +A EA F QM ++ EI ++S++Q C
Sbjct: 132 LFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEI-ATQFALSSVLQAC 186
Score = 59.3 bits (142), Expect = 3e-07
Identities = 30/115 (26%), Positives = 61/115 (53%)
Frame = +2
Query: 41 IRDSVALAQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALT 220
I AL+ V+Q + G Q+H +++ + +FV ++L +MYSKC +L+ A
Sbjct: 173 IATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACK 232
Query: 221 LFDKMPQRNIVSWTAMISAYAQRRYHTEAWLLFNQMLKSEIWQVHSLMNSLMQLC 385
F++MP ++ V WT+MI + + +A + +M+ +++ ++ S + C
Sbjct: 233 AFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSAC 287
Score = 56.6 bits (135), Expect = 2e-06
Identities = 25/88 (28%), Positives = 50/88 (56%)
Frame = +2
Query: 68 VIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALTLFDKMPQRN 247
+I+ A +L G QLH +++ N++ FVS+ L++MY KC ++++ LFD++ +
Sbjct: 385 LIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPD 444
Query: 248 IVSWTAMISAYAQRRYHTEAWLLFNQML 331
++W ++ ++Q A FN M+
Sbjct: 445 EIAWNTLVGVFSQHGLGRNAIETFNGMI 472
>ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 85.5 bits (210), Expect(2) = 1e-19
Identities = 43/97 (44%), Positives = 65/97 (67%)
Frame = +2
Query: 47 DSVALAQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALTLF 226
DSV + QT + +G+++HAH+I+ Y+P +++ L+ +Y+KCR L A +
Sbjct: 481 DSVLTECISQTAIR-----EGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVL 535
Query: 227 DKMPQRNIVSWTAMISAYAQRRYHTEAWLLFNQMLKS 337
D+MP+RN+VSWTAMIS Y+QR Y +EA LF +ML S
Sbjct: 536 DEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMS 572
Score = 35.8 bits (81), Expect(2) = 1e-19
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 343 LAGTQPNEFTYATVLTCCSGDRG 411
++GT PNEFT+ATVLT C+ G
Sbjct: 571 MSGTAPNEFTFATVLTSCTSSSG 593
Score = 70.5 bits (171), Expect = 1e-10
Identities = 33/92 (35%), Positives = 52/92 (56%)
Frame = +2
Query: 53 VALAQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALTLFDK 232
V A V+ + L G+Q+H+H++R + + N L++MYSKC L Y+ +FD
Sbjct: 680 VTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDS 739
Query: 233 MPQRNIVSWTAMISAYAQRRYHTEAWLLFNQM 328
MP+R ++SW AM+ Y++ EA LF M
Sbjct: 740 MPERTVISWNAMLVGYSKHGLGREAVELFKLM 771
Score = 63.9 bits (154), Expect = 1e-08
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Frame = +2
Query: 62 AQVIQTYAKTKQLVKGKQLHAHLIRINYQPCIFVSNHLLNMYSKCRKLNYALTLFDKMPQ 241
A V+ + + G+Q+H+ +I+ +++ IFV + LL+MY+K K+ A +FD +P+
Sbjct: 582 ATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPE 641
Query: 242 RNIVSWTAMISAYAQRRYHTEAWLLFNQM----LKSEIWQVHSLMNSLMQLCLL 391
R++VS TA+IS YAQ EA LF ++ ++S S++ +L L L
Sbjct: 642 RDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAAL 695