BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023797
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28135.3| unnamed protein product [Vitis vinifera]              135   6e-32
ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containi...   135   6e-32
ref|XP_002866111.1| pentatricopeptide repeat-containing protein ...   125   3e-29
ref|NP_200385.1| pentatricopeptide repeat-containing protein [Ar...   122   2e-28
gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarab...   120   5e-28

>emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  135 bits (340), Expect(2) = 6e-32
 Identities = 62/100 (62%), Positives = 81/100 (81%)
 Frame = -1

Query: 321  SHRLSPLQENEKVQNHILYKQYFRHISSLCKESRIEEAVELLTEMDFKNFRVGPEVYGEL 142
            S RL+ LQE ++     LYK YF HISSLCK+  ++E+V LL+EM+F++F++GPE+YGEL
Sbjct: 1122 STRLAKLQEKDE-NRRSLYKSYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGEL 1180

Query: 141  LQGCVYERALFTGKQIHARVLKNGDFYCKNEYIELS*LYF 22
            LQGCVYERAL TG+QIHAR+LKNGDF+ KNEY+E   + F
Sbjct: 1181 LQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVF 1220



 Score = 26.9 bits (58), Expect(2) = 6e-32
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 40   TKLVIFYAKCD 8
            TKLV+FYAKCD
Sbjct: 1215 TKLVVFYAKCD 1225


>ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  135 bits (340), Expect(2) = 6e-32
 Identities = 62/100 (62%), Positives = 81/100 (81%)
 Frame = -1

Query: 321 SHRLSPLQENEKVQNHILYKQYFRHISSLCKESRIEEAVELLTEMDFKNFRVGPEVYGEL 142
           S RL+ LQE ++     LYK YF HISSLCK+  ++E+V LL+EM+F++F++GPE+YGEL
Sbjct: 27  STRLAKLQEKDE-NRRSLYKSYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGEL 85

Query: 141 LQGCVYERALFTGKQIHARVLKNGDFYCKNEYIELS*LYF 22
           LQGCVYERAL TG+QIHAR+LKNGDF+ KNEY+E   + F
Sbjct: 86  LQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVF 125



 Score = 26.9 bits (58), Expect(2) = 6e-32
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 40  TKLVIFYAKCD 8
           TKLV+FYAKCD
Sbjct: 120 TKLVVFYAKCD 130


>ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297311946|gb|EFH42370.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 829

 Score =  125 bits (313), Expect(2) = 3e-29
 Identities = 61/105 (58%), Positives = 75/105 (71%)
 Frame = -1

Query: 336 LTFKPSHRLSPLQENEKVQNHILYKQYFRHISSLCKESRIEEAVELLTEMDFKNFRVGPE 157
           L F  S + S  Q +++  N      YF  +SSLCK   I+EA+ L+TEMDF+N R+GPE
Sbjct: 13  LPFSVSSKPSSKQHDDQALNPSS-TSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPE 71

Query: 156 VYGELLQGCVYERALFTGKQIHARVLKNGDFYCKNEYIELS*LYF 22
           +YGE+LQGCVYER L TGKQIHAR+LKNGDFY KNEYIE   + F
Sbjct: 72  IYGEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIF 116



 Score = 28.5 bits (62), Expect(2) = 3e-29
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -3

Query: 40  TKLVIFYAKCDLL 2
           TKLVIFYAKCD L
Sbjct: 111 TKLVIFYAKCDAL 123


>ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g55740, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
           gi|9758608|dbj|BAB09241.1| selenium-binding protein-like
           [Arabidopsis thaliana] gi|332009292|gb|AED96675.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 830

 Score =  122 bits (306), Expect(2) = 2e-28
 Identities = 54/79 (68%), Positives = 65/79 (82%)
 Frame = -1

Query: 258 YFRHISSLCKESRIEEAVELLTEMDFKNFRVGPEVYGELLQGCVYERALFTGKQIHARVL 79
           YF  +SSLCK   I+EA+ L+TEMDF+N R+GPE+YGE+LQGCVYER L TGKQIHAR+L
Sbjct: 38  YFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARIL 97

Query: 78  KNGDFYCKNEYIELS*LYF 22
           KNGDFY +NEYIE   + F
Sbjct: 98  KNGDFYARNEYIETKLVIF 116



 Score = 28.5 bits (62), Expect(2) = 2e-28
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -3

Query: 40  TKLVIFYAKCDLL 2
           TKLVIFYAKCD L
Sbjct: 111 TKLVIFYAKCDAL 123


>gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
          Length = 811

 Score =  120 bits (302), Expect(2) = 5e-28
 Identities = 54/79 (68%), Positives = 64/79 (81%)
 Frame = -1

Query: 258 YFRHISSLCKESRIEEAVELLTEMDFKNFRVGPEVYGELLQGCVYERALFTGKQIHARVL 79
           YF  +SSLCK   I+EA+ L+TEMDF+N R+GPE+YGE LQGCVYER L TGKQIHAR+L
Sbjct: 18  YFHRVSSLCKNGEIKEALSLVTEMDFRNXRIGPEIYGEXLQGCVYERDLSTGKQIHARIL 77

Query: 78  KNGDFYCKNEYIELS*LYF 22
           KNGDFY +NEYIE   + F
Sbjct: 78  KNGDFYARNEYIETKLVIF 96



 Score = 28.5 bits (62), Expect(2) = 5e-28
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -3

Query: 40  TKLVIFYAKCDLL 2
           TKLVIFYAKCD L
Sbjct: 91  TKLVIFYAKCDAL 103