BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023624
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004136798.1| PREDICTED: pentatricopeptide repeat-containi...    69   3e-10
ref|XP_002272104.1| PREDICTED: pentatricopeptide repeat-containi...    56   3e-06

>ref|XP_004136798.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Cucumis sativus]
           gi|449494815|ref|XP_004159654.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial-like [Cucumis sativus]
          Length = 405

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 10/108 (9%)
 Frame = -3

Query: 294 AMMMLRNPKTHVALLRMFSSSSSITPT----------QYRKSKTLIRNETDPDKIAQVFL 145
           A  + R P+    + R+ S S S TP             R +K+ I +++DPDK+AQ F+
Sbjct: 2   AAALPRTPRRLFLISRLHSFSYSTTPPLQPTSDSPFPSLRAAKSAILSQSDPDKLAQSFI 61

Query: 144 KTSYNPRFYRDRSAFHISVRKLAKLQRFDLVEKILEQQIETPLLKTEG 1
           + S  P F R R  +H S+RKLA+ QRFDL++ I++   ++P   +EG
Sbjct: 62  QASTLPSFCRYRPIYHQSIRKLARAQRFDLIDVIIQSHHKSPSATSEG 109


>ref|XP_002272104.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
           mitochondrial [Vitis vinifera]
           gi|297738261|emb|CBI27462.3| unnamed protein product
           [Vitis vinifera]
          Length = 386

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
 Frame = -3

Query: 285 MLRNPKTHVALLRMFSSSSSITPTQYRKSKTLIRNETDPDKIAQVFLKTSYN-PRFYRDR 109
           + R P+  ++L R  + S   T   +  +K+ + +E DP+K+A +F   S N  RF R R
Sbjct: 4   LCRIPRRLLSLARFSTLSDPFTT--FLAAKSAVESEPDPEKLAHIFHHQSSNFARFRRHR 61

Query: 108 SAFHISVRKLAKLQRFDLVEKILEQQIETPLLKTEG 1
             + +S R+L++  R DLVE++++ Q   P  +TEG
Sbjct: 62  PLYQLSCRRLSRSGRLDLVERLIDHQKTLPHPRTEG 97