BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023517
         (282 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...   133   1e-29
emb|CBI37346.3| unnamed protein product [Vitis vinifera]              133   1e-29
ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [...   132   3e-29
emb|CBI29513.3| unnamed protein product [Vitis vinifera]              131   6e-29
ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis t...   129   2e-28

>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score =  133 bits (335), Expect = 1e-29
 Identities = 63/69 (91%), Positives = 67/69 (97%)
 Frame = -1

Query: 207 KYTPLEQQVLQLKEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPT 28
           KYTPLEQQV+ LK+KYPDVLLM+EVGY+YRFFGEDAEIAARVLGIYAH DHNFLTASIPT
Sbjct: 112 KYTPLEQQVVDLKQKYPDVLLMVEVGYRYRFFGEDAEIAARVLGIYAHVDHNFLTASIPT 171

Query: 27  FRLNVHVRR 1
           FRLNVHVRR
Sbjct: 172 FRLNVHVRR 180


>emb|CBI37346.3| unnamed protein product [Vitis vinifera]
          Length = 490

 Score =  133 bits (335), Expect = 1e-29
 Identities = 63/69 (91%), Positives = 67/69 (97%)
 Frame = -1

Query: 207 KYTPLEQQVLQLKEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPT 28
           KYTPLEQQV+ LK+KYPDVLLM+EVGY+YRFFGEDAEIAARVLGIYAH DHNFLTASIPT
Sbjct: 112 KYTPLEQQVVDLKQKYPDVLLMVEVGYRYRFFGEDAEIAARVLGIYAHVDHNFLTASIPT 171

Query: 27  FRLNVHVRR 1
           FRLNVHVRR
Sbjct: 172 FRLNVHVRR 180


>ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis]
           gi|223549918|gb|EEF51405.1| DNA mismatch repair protein
           MSH3, putative [Ricinus communis]
          Length = 1100

 Score =  132 bits (332), Expect = 3e-29
 Identities = 63/69 (91%), Positives = 65/69 (94%)
 Frame = -1

Query: 207 KYTPLEQQVLQLKEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPT 28
           KYTPLE+QVL LK KYPDVLLMIEVGYKYRFFGEDAEIA RVLGIYAH DHNF+TASIPT
Sbjct: 109 KYTPLEKQVLDLKTKYPDVLLMIEVGYKYRFFGEDAEIAGRVLGIYAHKDHNFMTASIPT 168

Query: 27  FRLNVHVRR 1
           FRLNVHVRR
Sbjct: 169 FRLNVHVRR 177


>emb|CBI29513.3| unnamed protein product [Vitis vinifera]
          Length = 470

 Score =  131 bits (329), Expect = 6e-29
 Identities = 62/69 (89%), Positives = 66/69 (95%)
 Frame = -1

Query: 207 KYTPLEQQVLQLKEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPT 28
           KYTPLEQQV+ LK+KYPDVLLM+EVGY+YRFFGEDAEIAARVL IYAH DHNFLTASIPT
Sbjct: 114 KYTPLEQQVVDLKQKYPDVLLMVEVGYRYRFFGEDAEIAARVLAIYAHVDHNFLTASIPT 173

Query: 27  FRLNVHVRR 1
           FRLNVHVRR
Sbjct: 174 FRLNVHVRR 182


>ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis thaliana]
           gi|12644077|sp|O65607.2|MSH3_ARATH RecName: Full=DNA
           mismatch repair protein MSH3; Short=AtMSH3; AltName:
           Full=MutS protein homolog 3 gi|3319876|emb|CAA07684.1|
           Msh3 protein [Arabidopsis thaliana]
           gi|332659675|gb|AEE85075.1| DNA mismatch repair protein
           Msh3 [Arabidopsis thaliana]
          Length = 1081

 Score =  129 bits (325), Expect = 2e-28
 Identities = 59/69 (85%), Positives = 66/69 (95%)
 Frame = -1

Query: 207 KYTPLEQQVLQLKEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPT 28
           KYTPLEQQV++LK KYPDV+LM+EVGY+YRFFGEDAEIAARVLGIYAH DHNF+TAS+PT
Sbjct: 103 KYTPLEQQVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIYAHMDHNFMTASVPT 162

Query: 27  FRLNVHVRR 1
           FRLN HVRR
Sbjct: 163 FRLNFHVRR 171