BLASTX nr result

ID: Coptis24_contig00023481 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023481
         (770 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002317485.1| predicted protein [Populus trichocarpa] gi|2...    60   5e-07
ref|XP_002329124.1| predicted protein [Populus trichocarpa] gi|2...    59   1e-06

>ref|XP_002317485.1| predicted protein [Populus trichocarpa] gi|222860550|gb|EEE98097.1|
           predicted protein [Populus trichocarpa]
          Length = 249

 Score = 60.1 bits (144), Expect = 5e-07
 Identities = 30/56 (53%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +2

Query: 137 FALPVAPSQV-QHSDFEFGSSTSKIPINDPNKDTPADVLFHNGRLLPHAYQCPSQK 301
           F+ P  PS + Q SDFEFG  T   P  DPNK +PAD LF NGRLLPH++    Q+
Sbjct: 32  FSFPSTPSTLDQDSDFEFGCLTPDSPSRDPNKSSPADHLFFNGRLLPHSFPVLQQQ 87


>ref|XP_002329124.1| predicted protein [Populus trichocarpa] gi|222869793|gb|EEF06924.1|
           predicted protein [Populus trichocarpa]
          Length = 235

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
 Frame = +2

Query: 116 SSVESFSFALPVAPSQV-QHSDFEFGSSTSKIPINDPNKDTPADVLFHNGRLLPHAY 283
           +S   + F+ P  P  + Q SDFEFG  T   P  DPNK++PAD LF NGRLLPH++
Sbjct: 9   TSSREYIFSFPSTPGTLDQDSDFEFGCLTPDSPSCDPNKNSPADHLFFNGRLLPHSF 65


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