BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023409
         (202 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512435.1| pentatricopeptide repeat-containing protein,...    77   1e-12
ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containi...    72   5e-11
emb|CBI39592.3| unnamed protein product [Vitis vinifera]               72   5e-11
ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containi...    71   8e-11
ref|XP_002512508.1| pentatricopeptide repeat-containing protein,...    71   8e-11

>ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548396|gb|EEF49887.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 546

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 39/64 (60%), Positives = 46/64 (71%)
 Frame = +2

Query: 8   MAGQGITPTIVTYNTLIDAYCKDGKMEEAVLLHSAMSLARDVCNDDVSTYNCLISGFCRE 187
           M  QGITP + TYN LIDAYCKD  ME+A  L+  M L + VC  DVSTYNCLI+G CR+
Sbjct: 332 MPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIM-LGKGVC-PDVSTYNCLIAGLCRK 389

Query: 188 GNRE 199
           G+ E
Sbjct: 390 GDLE 393



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 28/64 (43%), Positives = 40/64 (62%)
 Frame = +2

Query: 8   MAGQGITPTIVTYNTLIDAYCKDGKMEEAVLLHSAMSLARDVCNDDVSTYNCLISGFCRE 187
           M  +G+ P+ +TYNT+ID YCK+G +  A+ L S M     + N  V+TYN LI GFC++
Sbjct: 437 MCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLAN--VATYNVLIKGFCKK 494

Query: 188 GNRE 199
              E
Sbjct: 495 DKLE 498


>ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 36/59 (61%), Positives = 45/59 (76%)
 Frame = +2

Query: 17  QGITPTIVTYNTLIDAYCKDGKMEEAVLLHSAMSLARDVCNDDVSTYNCLISGFCREGN 193
           +G+ P ++T+NTLIDAY K G+M++A LL S M L   VC  +VSTYNCLI GFCREGN
Sbjct: 398 RGLAPNVITFNTLIDAYGKAGRMDDAFLLRS-MMLDTGVC-PNVSTYNCLIVGFCREGN 454



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/62 (46%), Positives = 38/62 (61%)
 Frame = +2

Query: 8   MAGQGITPTIVTYNTLIDAYCKDGKMEEAVLLHSAMSLARDVCNDDVSTYNCLISGFCRE 187
           M   G +P+++TYNT+ID YCK GKM +A  L   M   R   N+   T+N LI GFCR+
Sbjct: 255 MKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNE--ITFNILIDGFCRD 312

Query: 188 GN 193
            N
Sbjct: 313 EN 314



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/60 (45%), Positives = 39/60 (65%)
 Frame = +2

Query: 8   MAGQGITPTIVTYNTLIDAYCKDGKMEEAVLLHSAMSLARDVCNDDVSTYNCLISGFCRE 187
           M  QG+ P +VTYN+LI+  C +GK++EA+ L   MS        +V TYN LI+GFC++
Sbjct: 325 MQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMG--LKPNVVTYNALINGFCKK 382


>emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 36/59 (61%), Positives = 45/59 (76%)
 Frame = +2

Query: 17  QGITPTIVTYNTLIDAYCKDGKMEEAVLLHSAMSLARDVCNDDVSTYNCLISGFCREGN 193
           +G+ P ++T+NTLIDAY K G+M++A LL S M L   VC  +VSTYNCLI GFCREGN
Sbjct: 398 RGLAPNVITFNTLIDAYGKAGRMDDAFLLRS-MMLDTGVC-PNVSTYNCLIVGFCREGN 454



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/62 (46%), Positives = 38/62 (61%)
 Frame = +2

Query: 8   MAGQGITPTIVTYNTLIDAYCKDGKMEEAVLLHSAMSLARDVCNDDVSTYNCLISGFCRE 187
           M   G +P+++TYNT+ID YCK GKM +A  L   M   R   N+   T+N LI GFCR+
Sbjct: 255 MKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNE--ITFNILIDGFCRD 312

Query: 188 GN 193
            N
Sbjct: 313 EN 314



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/60 (45%), Positives = 39/60 (65%)
 Frame = +2

Query: 8   MAGQGITPTIVTYNTLIDAYCKDGKMEEAVLLHSAMSLARDVCNDDVSTYNCLISGFCRE 187
           M  QG+ P +VTYN+LI+  C +GK++EA+ L   MS        +V TYN LI+GFC++
Sbjct: 325 MQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMG--LKPNVVTYNALINGFCKK 382


>ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
           gi|449524964|ref|XP_004169491.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 35/61 (57%), Positives = 41/61 (67%)
 Frame = +2

Query: 17  QGITPTIVTYNTLIDAYCKDGKMEEAVLLHSAMSLARDVCNDDVSTYNCLISGFCREGNR 196
           QG+TP ++T+NTL+  YCK GKMEEA LL   M     + N   STYNCLI GFCREG  
Sbjct: 402 QGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPN--ASTYNCLIVGFCREGKM 459

Query: 197 E 199
           E
Sbjct: 460 E 460



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 25/60 (41%), Positives = 39/60 (65%)
 Frame = +2

Query: 8   MAGQGITPTIVTYNTLIDAYCKDGKMEEAVLLHSAMSLARDVCNDDVSTYNCLISGFCRE 187
           M  QG+ PT+VTYN+L++  C +GK+ EA +L   M  +      +V TYN LI+G+C++
Sbjct: 329 MQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSN--LKPNVITYNALINGYCKK 386


>ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548469|gb|EEF49960.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 444

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 38/65 (58%), Positives = 44/65 (67%)
 Frame = +2

Query: 8   MAGQGITPTIVTYNTLIDAYCKDGKMEEAVLLHSAMSLARDVCNDDVSTYNCLISGFCRE 187
           M  Q ITP + TYN LIDAYCKD  ME+A  L+  M L + V   DVSTYNCLI G CR+
Sbjct: 311 MPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIM-LGKGV-YPDVSTYNCLIVGLCRK 368

Query: 188 GNREG 202
           G+ EG
Sbjct: 369 GDLEG 373