BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023403
         (296 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003534698.1| PREDICTED: probable splicing factor 3A subun...    80   2e-13
ref|XP_003546472.1| PREDICTED: probable splicing factor 3A subun...    80   2e-13
ref|XP_003536628.1| PREDICTED: probable splicing factor 3A subun...    78   9e-13
ref|XP_003555946.1| PREDICTED: probable splicing factor 3A subun...    77   2e-12
ref|XP_002278479.1| PREDICTED: probable splicing factor 3A subun...    75   7e-12

>ref|XP_003534698.1| PREDICTED: probable splicing factor 3A subunit 1-like [Glycine max]
          Length = 806

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 44/87 (50%), Positives = 57/87 (65%), Gaps = 9/87 (10%)
 Frame = +2

Query: 62  VMLTTMQLFPLPAPPLDGIFAV---SHGVTGNSKPHGKG-----PIP-TVATHTRSIGMI 214
           +ML ++ + PLPAPP DG       S  +  N +   K      P P TVATHTR+IG+I
Sbjct: 1   MMLGSLPILPLPAPPSDGNLGPLPESQVIDDNEEEQNKSNSASVPAPATVATHTRTIGII 60

Query: 215 HPPLDMRSIVDKTAHFVATHGPDFEKR 295
           HPP D+R+IVDKT+ FVA +GP+FEKR
Sbjct: 61  HPPPDIRTIVDKTSQFVAKNGPEFEKR 87


>ref|XP_003546472.1| PREDICTED: probable splicing factor 3A subunit 1-like [Glycine max]
          Length = 802

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 42/84 (50%), Positives = 54/84 (64%), Gaps = 6/84 (7%)
 Frame = +2

Query: 62  VMLTTMQLFPLPAPPLDGIFAV---SHGVTGNSKPHGKGPIP---TVATHTRSIGMIHPP 223
           +ML ++ + PLPAPP DG       S  +           +P   TVATHTR+IG+IHPP
Sbjct: 1   MMLGSLPILPLPAPPSDGNLGPLPESQVIEEEQNQSNSASVPAPVTVATHTRTIGIIHPP 60

Query: 224 LDMRSIVDKTAHFVATHGPDFEKR 295
            D+R+IVDKTA FVA +GP+FEKR
Sbjct: 61  PDIRTIVDKTAQFVAKNGPEFEKR 84


>ref|XP_003536628.1| PREDICTED: probable splicing factor 3A subunit 1-like [Glycine max]
          Length = 801

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 7/84 (8%)
 Frame = +2

Query: 65  MLTTMQLFPLPAPPLDGIFA------VSHGVTGNSKPHGKGPIP-TVATHTRSIGMIHPP 223
           ML ++ + PLPAPP DG         V      N       P P TVATHTR+IG+IHPP
Sbjct: 1   MLGSLPILPLPAPPSDGNLGPLPESQVIDNEEQNKSNSVSVPAPATVATHTRTIGIIHPP 60

Query: 224 LDMRSIVDKTAHFVATHGPDFEKR 295
            D+R+IVDKT+ FVA +GP+FEKR
Sbjct: 61  PDIRTIVDKTSQFVAKNGPEFEKR 84


>ref|XP_003555946.1| PREDICTED: probable splicing factor 3A subunit 1-like isoform 1
           [Glycine max] gi|356575642|ref|XP_003555947.1|
           PREDICTED: probable splicing factor 3A subunit 1-like
           isoform 2 [Glycine max]
          Length = 798

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 6/83 (7%)
 Frame = +2

Query: 65  MLTTMQLFPLPAPPLDGIFAV---SHGVTGNSKPHGKGPIP---TVATHTRSIGMIHPPL 226
           ML ++ + PLPAPP DG       S  +           +P   TV THTR+IG+IHPP 
Sbjct: 1   MLGSLPILPLPAPPSDGNLGPLPESQVIEEEQNKSNSASVPAPATVVTHTRTIGIIHPPP 60

Query: 227 DMRSIVDKTAHFVATHGPDFEKR 295
           D+R+IVDKT+ FVA +GP+FEKR
Sbjct: 61  DIRTIVDKTSQFVAKNGPEFEKR 83


>ref|XP_002278479.1| PREDICTED: probable splicing factor 3A subunit 1-like [Vitis
           vinifera]
          Length = 814

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 41/88 (46%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
 Frame = +2

Query: 65  MLTTMQLFPLPAPPLDGIFA-----------VSHGVTGNSKPHGKGPIPTVATHTRSIGM 211
           ML    + PLPAPP DG                  V    K        +VATHTR+IG+
Sbjct: 1   MLGAFPILPLPAPPSDGNLGPLPLSQLQDQTTDENVETEEKNKVNSAPASVATHTRTIGI 60

Query: 212 IHPPLDMRSIVDKTAHFVATHGPDFEKR 295
           IHPP D+R+IVDKTA FVA +GP+FEKR
Sbjct: 61  IHPPPDIRNIVDKTAQFVAKNGPEFEKR 88