BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023312
         (1039 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003554261.1| PREDICTED: F-box/kelch-repeat protein SKIP30...    92   3e-16
ref|XP_003632309.1| PREDICTED: F-box/kelch-repeat protein SKIP30...    91   4e-16
ref|XP_002524761.1| Protein AFR, putative [Ricinus communis] gi|...    91   4e-16
ref|XP_003521251.1| PREDICTED: F-box/kelch-repeat protein SKIP30...    90   1e-15
gb|ACU17996.1| unknown [Glycine max]                                   90   1e-15

>ref|XP_003554261.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max]
          Length = 345

 Score = 91.7 bits (226), Expect = 3e-16
 Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
 Frame = +2

Query: 95  LPD-VLLHCLALVPLSI--LTCRLFHSWRSALCSHELFRARFEVEASKDLISACAIDPVI 265
           LPD V + CLA VP  +  +   +  SW++A+CS ELF+AR EV +++DL+  CA DP  
Sbjct: 8   LPDAVAIRCLARVPFYLHPVLELVSRSWQAAICSPELFKARQEVGSTEDLLCVCAFDPEN 67

Query: 266 LSQLYGSRRDLWMNLPVFPSEVWHLANLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFAS 445
           L QLY   +DLW+ LPV PS++ HL+N G VST  K   +   +    P+       FA+
Sbjct: 68  LWQLYDPMQDLWITLPVLPSKIRHLSNFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFAT 127

Query: 446 NKV 454
           ++V
Sbjct: 128 DEV 130



 Score = 60.1 bits (144), Expect(2) = 1e-07
 Identities = 32/67 (47%), Positives = 42/67 (62%)
 Frame = +3

Query: 399 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 578
           DAVDPLTGD +G     + WSY  +  + A R  MLV  + F CC+ + K VVA G T+ 
Sbjct: 112 DAVDPLTGDQDGCFATDEVWSYDPVAREWASRASMLVPRSMFACCVLNGKIVVAGGFTSC 171

Query: 579 RKSITRS 599
           RKSI++S
Sbjct: 172 RKSISQS 178



 Score = 22.7 bits (47), Expect(2) = 1e-07
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 577 SGSPSQDPEKDVWLGSCNT*SSSRNSAYFGLV 672
           S S   DP+KD+W+   +    + NSA  G+V
Sbjct: 176 SQSEMYDPDKDIWIPMPDL-HRTHNSACSGVV 206


>ref|XP_003632309.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 1 [Vitis
           vinifera] gi|359479635|ref|XP_003632310.1| PREDICTED:
           F-box/kelch-repeat protein SKIP30-like isoform 2 [Vitis
           vinifera] gi|359479637|ref|XP_003632311.1| PREDICTED:
           F-box/kelch-repeat protein SKIP30-like isoform 3 [Vitis
           vinifera]
          Length = 345

 Score = 91.3 bits (225), Expect = 4e-16
 Identities = 57/124 (45%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
 Frame = +2

Query: 95  LPD-VLLHCLALVPLSILTCRL---FHSWRSALCSHELFRARFEVEASKDLISACAIDPV 262
           LPD V L CLA VP   L  RL     SWR A+   ELF+AR EV +S+DL+  CA DP 
Sbjct: 8   LPDAVALRCLAWVPF-YLHPRLELVSRSWRDAIRGPELFKARQEVGSSEDLLCVCAFDPE 66

Query: 263 ILSQLYGSRRDLWMNLPVFPSEVWHLANLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFA 442
            L QLY  R+DLW++LPV PS + HLA+ G VST  K   +   +    P+       FA
Sbjct: 67  NLWQLYDPRKDLWISLPVLPSRIRHLAHFGAVSTAGKLFVLGGGSDAVDPLTGDQDGSFA 126

Query: 443 SNKV 454
           +N+V
Sbjct: 127 TNEV 130



 Score = 66.6 bits (161), Expect(2) = 2e-09
 Identities = 35/67 (52%), Positives = 44/67 (65%)
 Frame = +3

Query: 399 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 578
           DAVDPLTGD +GS    + WSY  ++ Q A R  MLV  A F CC+ D K VVA G T+ 
Sbjct: 112 DAVDPLTGDQDGSFATNEVWSYDPIIRQWAPRAPMLVPRAMFACCVLDGKIVVAGGFTSC 171

Query: 579 RKSITRS 599
           RKSI+++
Sbjct: 172 RKSISQA 178



 Score = 21.9 bits (45), Expect(2) = 2e-09
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 595 DPEKDVWLGSCNT*SSSRNSAYFGLV 672
           DPEKD W+ S      + NSA  G+V
Sbjct: 182 DPEKDAWV-SIPDLHRTHNSACSGVV 206


>ref|XP_002524761.1| Protein AFR, putative [Ricinus communis]
           gi|223535945|gb|EEF37604.1| Protein AFR, putative
           [Ricinus communis]
          Length = 345

 Score = 91.3 bits (225), Expect = 4e-16
 Identities = 53/123 (43%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
 Frame = +2

Query: 95  LPDVL-LHCLALVPLSILTCR--LFHSWRSALCSHELFRARFEVEASKDLISACAIDPVI 265
           LPD + + C+A VP  +      + HSWRSA+ S ELF+AR EV +++DL+  CA +P  
Sbjct: 8   LPDAIAIRCIARVPFYLHPKLELVSHSWRSAIRSPELFKARQEVGSAEDLLCVCAFEPEN 67

Query: 266 LSQLYGSRRDLWMNLPVFPSEVWHLANLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFAS 445
           L QLY   RDLW+ LPV PS++ HLA+ GVVST  K   +   +    P+       FA+
Sbjct: 68  LWQLYDPLRDLWITLPVLPSKIRHLAHFGVVSTAGKLYVLGGGSDAVDPLTGDQDGNFAT 127

Query: 446 NKV 454
           N+V
Sbjct: 128 NEV 130



 Score = 62.0 bits (149), Expect(2) = 3e-08
 Identities = 33/67 (49%), Positives = 43/67 (64%)
 Frame = +3

Query: 399 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 578
           DAVDPLTGD +G+    + WSY  ++ Q A R  MLV  A F CC+   K VVA G T+ 
Sbjct: 112 DAVDPLTGDQDGNFATNEVWSYDPVIRQWALRASMLVPRAMFACCVLKGKIVVAGGFTSC 171

Query: 579 RKSITRS 599
           RKSI+++
Sbjct: 172 RKSISQA 178



 Score = 23.1 bits (48), Expect(2) = 3e-08
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 595 DPEKDVWLGSCNT*SSSRNSAYFGLV 672
           DPEKDVW+   +    + NSA  G+V
Sbjct: 182 DPEKDVWIPIPDL-HRTHNSACSGIV 206


>ref|XP_003521251.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max]
          Length = 345

 Score = 89.7 bits (221), Expect = 1e-15
 Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
 Frame = +2

Query: 92  RLPD-VLLHCLALVPLSI--LTCRLFHSWRSALCSHELFRARFEVEASKDLISACAIDPV 262
           RLPD V + CLA VP     +   +  SW++A+ S ELF+AR EV +++DL+  CA DP 
Sbjct: 7   RLPDAVAIRCLARVPFYFHPVLELVSRSWQAAIRSPELFKARQEVGSTEDLLCVCAFDPE 66

Query: 263 ILSQLYGSRRDLWMNLPVFPSEVWHLANLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFA 442
            L QLY   RDLW+ LPV PS++ HL+N G VST  K   +   +    P+       FA
Sbjct: 67  NLWQLYDPMRDLWITLPVLPSKIRHLSNFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFA 126

Query: 443 SNKV 454
           +++V
Sbjct: 127 TDEV 130



 Score = 60.5 bits (145), Expect(2) = 2e-07
 Identities = 32/67 (47%), Positives = 43/67 (64%)
 Frame = +3

Query: 399 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 578
           DAVDPLTGD +G     + WSY  ++ Q A R  MLV  + F CC+ + K VVA G T+ 
Sbjct: 112 DAVDPLTGDQDGCFATDEVWSYDPVVRQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSC 171

Query: 579 RKSITRS 599
           RKSI+++
Sbjct: 172 RKSISQA 178



 Score = 21.9 bits (45), Expect(2) = 2e-07
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 595 DPEKDVWLGSCNT*SSSRNSAYFGLV 672
           DP+KDVW+   +    + NSA  G+V
Sbjct: 182 DPDKDVWIPMPDL-HRTHNSACSGVV 206


>gb|ACU17996.1| unknown [Glycine max]
          Length = 345

 Score = 89.7 bits (221), Expect = 1e-15
 Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
 Frame = +2

Query: 92  RLPD-VLLHCLALVPLSI--LTCRLFHSWRSALCSHELFRARFEVEASKDLISACAIDPV 262
           RLPD V + CLA VP     +   +  SW++A+ S ELF+AR EV +++DL+  CA DP 
Sbjct: 7   RLPDAVAIRCLARVPFYFHPVLELVSRSWQAAIRSPELFKARQEVGSTEDLLCVCAFDPE 66

Query: 263 ILSQLYGSRRDLWMNLPVFPSEVWHLANLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFA 442
            L QLY   RDLW+ LPV PS++ HL+N G VST  K   +   +    P+       FA
Sbjct: 67  NLWQLYDPMRDLWITLPVLPSKIRHLSNFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFA 126

Query: 443 SNKV 454
           +++V
Sbjct: 127 TDEV 130



 Score = 60.5 bits (145), Expect(2) = 2e-07
 Identities = 32/67 (47%), Positives = 43/67 (64%)
 Frame = +3

Query: 399 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 578
           DAVDPLTGD +G     + WSY  ++ Q A R  MLV  + F CC+ + K VVA G T+ 
Sbjct: 112 DAVDPLTGDQDGCFATDEVWSYDPVVRQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSC 171

Query: 579 RKSITRS 599
           RKSI+++
Sbjct: 172 RKSISQA 178



 Score = 21.9 bits (45), Expect(2) = 2e-07
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 595 DPEKDVWLGSCNT*SSSRNSAYFGLV 672
           DP+KDVW+   +    + NSA  G+V
Sbjct: 182 DPDKDVWIPMPDL-HRTHNSACSGVV 206