BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023303
         (1012 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281924.1| PREDICTED: pentatricopeptide repeat-containi...   375   e-102
ref|XP_002276778.1| PREDICTED: pentatricopeptide repeat-containi...   371   e-100
ref|XP_002314145.1| predicted protein [Populus trichocarpa] gi|2...   340   4e-91
ref|XP_004145279.1| PREDICTED: pentatricopeptide repeat-containi...   339   7e-91
ref|XP_002517255.1| conserved hypothetical protein [Ricinus comm...   338   9e-91

>ref|XP_002281924.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
           isoform 1 [Vitis vinifera]
           gi|359478900|ref|XP_003632183.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46870
           isoform 2 [Vitis vinifera] gi|297745987|emb|CBI16043.3|
           unnamed protein product [Vitis vinifera]
          Length = 252

 Score =  375 bits (964), Expect = e-102
 Identities = 183/254 (72%), Positives = 216/254 (85%), Gaps = 1/254 (0%)
 Frame = +3

Query: 9   MAIRAIWKSKIPIISTTILQNLV-IPFQKSSSLTKLQNPNVEISSKEQFLNMRNYHDGRP 185
           MAIRA  +SKIPI S  ILQNL+  P ++S   T+ Q P +E+ S +  L  + YHDGRP
Sbjct: 1   MAIRAFSRSKIPIFSAKILQNLIKAPIKES---TRFQFPVLEVGSYKPLLGSKLYHDGRP 57

Query: 186 RGPLWKGKKMIGKEALFVISGLKRFKEDEDNLNKFIKSHVLRLLKMDLIAVLTELERQEE 365
           RGPLW+GKK+IGKEALFVI GLKRFK+DE+NL KFIKSHVLRLLKMD++AVLTELERQEE
Sbjct: 58  RGPLWRGKKLIGKEALFVILGLKRFKDDEENLRKFIKSHVLRLLKMDMVAVLTELERQEE 117

Query: 366 VSLALKIFCIIQKQDWYKPDVYLYKDLIVSLSKSKKMEEAMKVWEAMKNEDLFPDCQTYS 545
           VSLA+++F +I+KQDWYKPDVYLYKDLI++L+K KKM++AM++WE+M+ EDLFPD QTY+
Sbjct: 118 VSLAVEVFRVIRKQDWYKPDVYLYKDLIIALAKCKKMDDAMQLWESMRKEDLFPDYQTYT 177

Query: 546 EVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXXRNRVKEDFEEIFP 725
           EVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRI           RNRVK+DFEEIFP
Sbjct: 178 EVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFP 237

Query: 726 DRHIYDPPEEIFGM 767
           DRH+YDPPEEIFG+
Sbjct: 238 DRHVYDPPEEIFGV 251


>ref|XP_002276778.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
           [Vitis vinifera] gi|297745785|emb|CBI15841.3| unnamed
           protein product [Vitis vinifera]
          Length = 252

 Score =  371 bits (952), Expect = e-100
 Identities = 180/253 (71%), Positives = 213/253 (84%)
 Frame = +3

Query: 9   MAIRAIWKSKIPIISTTILQNLVIPFQKSSSLTKLQNPNVEISSKEQFLNMRNYHDGRPR 188
           MAIRA  +SKIPI S  ILQ+L+    K S  TK Q P +E++S +    +++YHDGRPR
Sbjct: 1   MAIRAFSRSKIPIFSAKILQSLIKSPIKES--TKFQFPVLEVASNKPLFGLKHYHDGRPR 58

Query: 189 GPLWKGKKMIGKEALFVISGLKRFKEDEDNLNKFIKSHVLRLLKMDLIAVLTELERQEEV 368
           GPLW+GKK+IGKEALFVI GLKRFK+DE+ L KFIKSHVLRLLKMD+IAVLTELERQEEV
Sbjct: 59  GPLWRGKKLIGKEALFVILGLKRFKDDEEKLRKFIKSHVLRLLKMDMIAVLTELERQEEV 118

Query: 369 SLALKIFCIIQKQDWYKPDVYLYKDLIVSLSKSKKMEEAMKVWEAMKNEDLFPDCQTYSE 548
           +LA+++F + QKQDWYKPDVYLYKDLI++L+K KKM+ AM++WE+M+ EDLFPD QTY+E
Sbjct: 119 TLAVEVFRVFQKQDWYKPDVYLYKDLIIALAKCKKMDNAMQLWESMRKEDLFPDYQTYTE 178

Query: 549 VIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXXRNRVKEDFEEIFPD 728
           VIRGFLR+GSPADAMNIYEDMKKSPDPPEELPFRI           RNRVK+DFEEIFPD
Sbjct: 179 VIRGFLRHGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFPD 238

Query: 729 RHIYDPPEEIFGM 767
           RH+YDPPEEIFG+
Sbjct: 239 RHVYDPPEEIFGI 251


>ref|XP_002314145.1| predicted protein [Populus trichocarpa] gi|222850553|gb|EEE88100.1|
           predicted protein [Populus trichocarpa]
          Length = 257

 Score =  340 bits (871), Expect = 4e-91
 Identities = 173/259 (66%), Positives = 207/259 (79%), Gaps = 6/259 (2%)
 Frame = +3

Query: 9   MAIRAIWKSKIPIIST--TILQNLVIPFQKSSSLTKLQNPNVEISSKEQFL---NMRNYH 173
           M  RA+ +SKIP  S+   ILQNL     K S + + Q P  + S+ + FL    +R YH
Sbjct: 1   MLTRALSRSKIPNFSSIIVILQNLTT---KQSIIDQTQLPLSKASNIQSFLVPAGLRQYH 57

Query: 174 DGRPRGPLWKGKKMIGKEALFVISGLKRFKEDEDN-LNKFIKSHVLRLLKMDLIAVLTEL 350
           DGRPRGPLW+GKK+IGKEALFVI GLKRFK D+D  L++FIK+HV RLLK+D+IAVL+EL
Sbjct: 58  DGRPRGPLWRGKKLIGKEALFVILGLKRFKNDDDEKLDRFIKTHVFRLLKLDMIAVLSEL 117

Query: 351 ERQEEVSLALKIFCIIQKQDWYKPDVYLYKDLIVSLSKSKKMEEAMKVWEAMKNEDLFPD 530
           ERQEEVSLA+KIF +IQKQDWYKPDVYLYKDLI++L K+ KMEEAMK+WE M+NEDLFPD
Sbjct: 118 ERQEEVSLAVKIFRVIQKQDWYKPDVYLYKDLIMALLKTGKMEEAMKLWEDMRNEDLFPD 177

Query: 531 CQTYSEVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXXRNRVKEDF 710
            Q Y+E IRG+LR GSPADAMNIYEDMKKSPDPPEELPFRI           RNRVK+D+
Sbjct: 178 SQMYTEAIRGYLRDGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDY 237

Query: 711 EEIFPDRHIYDPPEEIFGM 767
           EE+FP++H+YDPPEEIFG+
Sbjct: 238 EELFPEKHVYDPPEEIFGI 256


>ref|XP_004145279.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g46870-like [Cucumis sativus]
           gi|449475090|ref|XP_004154371.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g46870-like [Cucumis sativus]
           gi|449508514|ref|XP_004163333.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g46870-like [Cucumis sativus]
          Length = 255

 Score =  339 bits (869), Expect = 7e-91
 Identities = 162/260 (62%), Positives = 203/260 (78%), Gaps = 6/260 (2%)
 Frame = +3

Query: 9   MAIRAIWKSKIPIISTTILQNLV------IPFQKSSSLTKLQNPNVEISSKEQFLNMRNY 170
           MAIR   +SK+P+ ++  LQ L       +P    S++T  Q       S+      R Y
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQP-----DSRRPIWGFRLY 55

Query: 171 HDGRPRGPLWKGKKMIGKEALFVISGLKRFKEDEDNLNKFIKSHVLRLLKMDLIAVLTEL 350
           HDGRPRGPLW+ +K IGKEALFVI GLKRFKEDE+   KF+KSHV RLLK+D++AVL EL
Sbjct: 56  HDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGEL 115

Query: 351 ERQEEVSLALKIFCIIQKQDWYKPDVYLYKDLIVSLSKSKKMEEAMKVWEAMKNEDLFPD 530
           ERQEEV+LA+KIF +I+KQDWYKPDVY+YKDLI++L++SKKM++AMK+WE+M+ E+LFPD
Sbjct: 116 ERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPD 175

Query: 531 CQTYSEVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXXRNRVKEDF 710
            QTY+EVIRGFLRYGSP+DAMN+YEDMKKSPDPP+ELPFRI           RNRVK+DF
Sbjct: 176 SQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDF 235

Query: 711 EEIFPDRHIYDPPEEIFGMR 770
           EE+FPD+H++DPPEEIF +R
Sbjct: 236 EELFPDQHVFDPPEEIFSLR 255


>ref|XP_002517255.1| conserved hypothetical protein [Ricinus communis]
           gi|223543626|gb|EEF45155.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 258

 Score =  338 bits (868), Expect = 9e-91
 Identities = 167/254 (65%), Positives = 203/254 (79%), Gaps = 7/254 (2%)
 Frame = +3

Query: 30  KSKIPIISTTILQNLVI-PFQK------SSSLTKLQNPNVEISSKEQFLNMRNYHDGRPR 188
           +S+I  +S  +LQNL   P ++      S +L  L   N    S   F  +R YHDGRPR
Sbjct: 5   RSRIAKLSVVLLQNLTNKPIKQTQLPPNSQALFDLNILNKHNHSHNSFSGLRQYHDGRPR 64

Query: 189 GPLWKGKKMIGKEALFVISGLKRFKEDEDNLNKFIKSHVLRLLKMDLIAVLTELERQEEV 368
           GPLW+GKK+IGKEALFVI GLKRFK++E+ L+KFIK+HVLRLLKMD+IAVLTELERQEEV
Sbjct: 65  GPLWRGKKLIGKEALFVILGLKRFKDEEEKLDKFIKTHVLRLLKMDMIAVLTELERQEEV 124

Query: 369 SLALKIFCIIQKQDWYKPDVYLYKDLIVSLSKSKKMEEAMKVWEAMKNEDLFPDCQTYSE 548
           SLA K+F IIQKQDWY PDVYLYKDLI++L++S KM++AMK+WEAM++E+LFPD Q Y+E
Sbjct: 125 SLATKVFQIIQKQDWYNPDVYLYKDLIIALTRSGKMDQAMKLWEAMRSENLFPDSQMYTE 184

Query: 549 VIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRIXXXXXXXXXXXRNRVKEDFEEIFPD 728
           +IRGFLR GSP DAMNIYEDMKKSPDPPEELPFRI           RNRVK+D+EE+FP+
Sbjct: 185 LIRGFLRDGSPGDAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDYEELFPE 244

Query: 729 RHIYDPPEEIFGMR 770
           +H+YDPPEEIFG+R
Sbjct: 245 KHVYDPPEEIFGVR 258