BLASTX nr result
ID: Coptis24_contig00023273
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00023273 (1440 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 167 5e-39 gb|EEC84982.1| hypothetical protein OsI_32248 [Oryza sativa Indi... 151 5e-34 gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana] 147 7e-33 gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 144 4e-32 gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 143 1e-31 >gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1374 Score = 167 bits (424), Expect = 5e-39 Identities = 133/431 (30%), Positives = 212/431 (49%), Gaps = 20/431 (4%) Frame = -1 Query: 1407 NHTNITLIPKIPNLNQVKNFRHISLCNSISWRIISTILANRLKPSLVKIISPLHSAFVKN 1228 N TNI LIPKI ++ +FR ISLCN I +++I ++ANRLK L +IS +AFVK Sbjct: 485 NKTNICLIPKILKAEKMTDFRPISLCNVI-YKVIGKLMANRLKKILPSLISETQAAFVKG 543 Query: 1227 RQITDNAKRFCKKLKKM----KGIHGFLAIKLDMPRAFDHIK*PFLFKNLKQLVSVKIGL 1060 R I+DN + L + K F+AIK D+ +A+D ++ PFL K ++ GL Sbjct: 544 RLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMR-------GL 596 Query: 1059 MFA*LLHPFLLIFN----------LNGSPFGKFSASRGI*AKVTLYPPTFLFIICTKFLS 910 FA H LI +NG+P G+ SRG+ L P +LF+ICT+ L Sbjct: 597 GFAD--HWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSP--YLFVICTEMLV 652 Query: 909 RNIAHLQSTIQVHGVCISRNAAPITHLMLADDCFIFLRAN---LIEAHNILVFYSV*ITI 739 + + + Q+ G+ ++R A PI+HL+ ADD + + N L + I+ YS+ Sbjct: 653 KMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQ 712 Query: 738 LICQLRN*LS*IFF--NF*S*LAC*T*KIDYRILRIPFSNSNNTYIGVSFNPVKPNQIGT 565 + L+ S I+F + C + R L I Y+G+ + +++ T Sbjct: 713 RVNYLK---SSIYFGKHISEERRC----LVKRKLGIEREGGEGVYLGLP-ESFQGSKVAT 764 Query: 564 SKILKS-VTYKINSWRNKLLFKAGRGTLIKSVVCAIPT*NMQTDLFTKTFCHDLDILSSN 388 LK + K+ W++ L G+ L+K+V A+PT M KT C ++ + + Sbjct: 765 LSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAE 824 Query: 387 FWWGTTNHNDNNKIYL*NWTRCCDKKSNGGCGFKHTYAQSMTLISKFC*KLISERNLFWV 208 FWW N + ++ W K+ GG GFK A ++ L+ K ++I+E++ Sbjct: 825 FWW--KNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMA 882 Query: 207 KLLKCKYFPNS 175 K+ K +YF S Sbjct: 883 KVFKSRYFSKS 893 >gb|EEC84982.1| hypothetical protein OsI_32248 [Oryza sativa Indica Group] gi|222630794|gb|EEE62926.1| hypothetical protein OsJ_17731 [Oryza sativa Japonica Group] Length = 893 Score = 151 bits (381), Expect = 5e-34 Identities = 121/419 (28%), Positives = 205/419 (48%), Gaps = 9/419 (2%) Frame = -1 Query: 1440 RLSY*FFASFWNHTNITLIPKIPNLNQVKNFRHISLCNSISWRIISTILANRLKPSLVKI 1261 +LS + WN T +TLIPK+ + ++K+ R ISLC ++ +++ S +L+NRLK L I Sbjct: 149 KLSNEHYGEGWNDTVVTLIPKVQSPERLKDLRPISLC-TVVYKLASKVLSNRLKLILPDI 207 Query: 1260 ISPLHSAFVKNRQITDNAKRFCKKL----KKMKGIHGFLAIKLDMPRAFDHIK*PFLFKN 1093 ISP SAFV R ITDN + K G G+ A+KLDM +A+D ++ FL K Sbjct: 208 ISPNQSAFVPQRLITDNVLLAYEMTHFMQTKRTGREGYAALKLDMSKAYDRVEWSFLEKM 267 Query: 1092 LKQLVSVKIGL-MFA*LLHPFLLIFNLNGSPFGKFSASRGI*AKVTLYPPTFLFIICTKF 916 + +L + + + + +NG + SRG+ + P +LF+IC + Sbjct: 268 MVRLGFAEGWVKLIMRCVSTVTYRIKVNGDLTDQIIPSRGLRQGDPISP--YLFLICAEG 325 Query: 915 LSRNIAHLQSTIQVHGVCISRNAAPITHLMLADDCFIFLRANLIEA---HNILVFYSV*I 745 S + + + GV + + A ++HL+ ADD + + N A N+L Y Sbjct: 326 FSSLLYAAEERGDLSGVKVCQQAPSVSHLLFADDSLLLFKVNERSAQCLQNVLNLYESCS 385 Query: 744 TILICQLRN*LS*IFFNF*S*LAC*T*KIDYRILRIPFSNSNNTYIGVSFNPVKPNQIGT 565 ++ + + S I F+ + A K+ IL I N Y+G+ + Sbjct: 386 GQIVNKDK---SSIMFSKNTSQA--DRKMVMEILDISTEARNEKYLGLPVYMGRSRAKTF 440 Query: 564 SKILKSVTYKINSWRNKLLFKAGRGTLIKSVVCAIPT*NMQTDLFTKTFCHDLDILSSNF 385 + + + V KI W+ KLL KAG+ LIK+V AIPT M TKT C ++ + + Sbjct: 441 AYLKERVWKKIQGWKEKLLSKAGKDILIKAVAQAIPTFAMSCFDLTKTLCDEISAIICRY 500 Query: 384 WWGTTNHNDNNKIYL*NWTRCCDKKSNGGCGFKHTYAQSMTLISKFC*KLIS-ERNLFW 211 +W + NK++ +W C +K GG G++ + ++ ++++ +S R++FW Sbjct: 501 FW--SQQETENKMHWLSWDLLCRRKKKGGLGYRDLHLFNLAMLARQGDWDVSLVRDIFW 557 >gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana] Length = 1023 Score = 147 bits (371), Expect = 7e-33 Identities = 126/431 (29%), Positives = 200/431 (46%), Gaps = 20/431 (4%) Frame = -1 Query: 1407 NHTNITLIPKIPNLNQVKNFRHISLCNSISWRIISTILANRLKPSLVKIISPLHSAFVKN 1228 N TNI LIPK ++ R ISLCN + ++IIS IL RLK L +IS HSAFV+ Sbjct: 335 NTTNICLIPKTERPTRMTELRPISLCN-VGYKIISKILCQRLKKILPSLISETHSAFVEG 393 Query: 1227 RQITDN---AKRFCKKLKKMKGIHG-FLAIKLDMPRAFDHIK*PFLFKNLKQLVSVK--- 1069 R I+DN A+ L+ G F+AIK DM +A+D ++ F+ + LK++ + Sbjct: 394 RLISDNILIAQEMFHGLRTNPSCKGKFMAIKTDMSKAYDRVEWNFIEELLKKMGFCEKWI 453 Query: 1068 IGLMFA*LLHPFLLIFNLNGSPFGKFSASRGI*AKVTLYPPTFLFIICTKFLSRNIAHLQ 889 +M+ + ++ LNG P G RG+ L P +LFI+CT+ L NI + Sbjct: 454 SWIMWCITTVQYRVL--LNGQPRGLIVPKRGLRQGDPLSP--YLFILCTEVLIANIRKAE 509 Query: 888 STIQVHGVCISRNAAPITHLMLADDCFIFLRANLIEAHNILVFYSV*ITILICQLRN*LS 709 + G+ ++ + ++HL+ A+D F +AN + IL + + S Sbjct: 510 QEKLITGIKVATASPSVSHLLFANDSLFFCKANKEQCGVILGILKQYEAVSGQMINFSKS 569 Query: 708 *IFFNF*S*LAC*T*KIDYRI-------LRIPFSNSNNTYIGVSFNPVKPNQIGTSK--- 559 I F K+ I L I +Y+G+ P +G SK Sbjct: 570 SIQFGH---------KVGDDIKAEIKSALGIHSIGGMGSYLGL------PESLGGSKTRI 614 Query: 558 ---ILKSVTYKINSWRNKLLFKAGRGTLIKSVVCAIPT*NMQTDLFTKTFCHDLDILSSN 388 + + +IN W K L K G+ +IKSVV +PT M KT L + Sbjct: 615 FSFVRDRLQTRINGWSAKFLSKGGKEVMIKSVVAVLPTYVMSCFRLPKTITSKLTSAVAK 674 Query: 387 FWWGTTNHNDNNKIYL*NWTRCCDKKSNGGCGFKHTYAQSMTLISKFC*KLISERNLFWV 208 FWW ++ ++ ++ W + C K++GG GF+ + L++K +LI+ + + Sbjct: 675 FWW--SSDGESRGMHWMAWNKLCSSKADGGLGFRSVNDFNSALLAKQLWRLITVPDSLFA 732 Query: 207 KLLKCKYFPNS 175 K+ K +YF S Sbjct: 733 KVFKGRYFRKS 743 >gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1715 Score = 144 bits (364), Expect = 4e-32 Identities = 122/428 (28%), Positives = 199/428 (46%), Gaps = 14/428 (3%) Frame = -1 Query: 1407 NHTNITLIPKIPNLNQVKNFRHISLCNSISWRIISTILANRLKPSLVKIISPLHSAFVKN 1228 N T I LIPKI + + ++R ISLC + S++IIS IL RLK L +IS +AFV Sbjct: 847 NQTQICLIPKIIDPKHMSDYRPISLCTA-SYKIISKILIKRLKQCLGDVISDSQAAFVPG 905 Query: 1227 RQITDN---AKRFCKKLKKMKGIH-GFLAIKLDMPRAFDHIK*PFLFKNLKQLVS----V 1072 + I+DN A LK + G++A+K D+ +A+D ++ FL K + QL V Sbjct: 906 QNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWV 965 Query: 1071 KIGLMFA*LLHPFLLIFNLNGSPFGKFSASRGI*AKVTLYPPTFLFIICTKFLSRNIAHL 892 K + + +LI NGSP+GK SRGI L P +LF+ C + LS + Sbjct: 966 KWIMTCVTSVSYEVLI---NGSPYGKIFPSRGIRQGDPLSP--YLFLFCAEVLSNMLRKA 1020 Query: 891 QSTIQVHGVCISRNAAPITHLMLADDCFIFLRANLIEAHNILVFYSV*ITILICQLRN*L 712 + Q+HG+ I+++ I+HL+ ADD F RA+ + + + ++ Sbjct: 1021 EVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAK 1080 Query: 711 S*IFFNF*S*LAC*T*KIDYRILRIPFSNSNNTYIGVSFNPVKPNQIGTSK------ILK 550 S I F + + +R+L I Y+G+ P Q+G K I+ Sbjct: 1081 SSIIFG--QKIPTMRRQRLHRLLGIDNVRGGGKYLGL------PEQLGRRKVELFEYIVT 1132 Query: 549 SVTYKINSWRNKLLFKAGRGTLIKSVVCAIPT*NMQTDLFTKTFCHDLDILSSNFWWGTT 370 V + W L AG+ +IK++ A+P +M L C++++ L + FWWG Sbjct: 1133 KVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWG-- 1190 Query: 369 NHNDNNKIYL*NWTRCCDKKSNGGCGFKHTYAQSMTLISKFC*KLISERNLFWVKLLKCK 190 K++ G GFK + + L++K ++++ +L K Sbjct: 1191 ------------------KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGL 1232 Query: 189 YFPNSYFL 166 Y+PN+ +L Sbjct: 1233 YYPNTTYL 1240 >gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana] Length = 1142 Score = 143 bits (360), Expect = 1e-31 Identities = 123/425 (28%), Positives = 199/425 (46%), Gaps = 14/425 (3%) Frame = -1 Query: 1407 NHTNITLIPKIPNLNQVKNFRHISLCNSISWRIISTILANRLKPSLVKIISPLHSAFVKN 1228 N TNI LIPK ++ R ISLCN + +++IS IL RLK L +IS SAFV Sbjct: 269 NTTNICLIPKTERPTRMTELRPISLCN-VGYKVISKILCQRLKTVLPNLISETQSAFVDG 327 Query: 1227 RQITDN---AKRFCKKLKKMKGIHG-FLAIKLDMPRAFDHIK*PFLFKNLKQLVSVK--- 1069 R I+DN A+ L+ F+AIK DM +A+D ++ F+ L+++ + Sbjct: 328 RLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWI 387 Query: 1068 IGLMFA*LLHPFLLIFNLNGSPFGKFSASRGI*AKVTLYPPTFLFIICTKFLSRNIAHLQ 889 +M+ + ++ +NG P G RG+ L P +LFI+CT+ L NI + Sbjct: 388 SWIMWCITTVQYKVL--INGQPKGLIIPERGLRQGDPLSP--YLFILCTEVLIANIRKAE 443 Query: 888 STIQVHGVCISRNAAPITHLMLADDCFIFLRANLIEAHNILVFYSV*ITILICQLRN*LS 709 + G+ ++ + ++HL+ ADD F +AN + IL ++ Q+ S Sbjct: 444 RQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKS 503 Query: 708 *IFFNF*S*LAC*T*KIDYR-ILRIPFSNSNNTYIGVSFNPVKPNQIGTSK------ILK 550 I F + K D + IL I +Y+G+ P +G SK + Sbjct: 504 SIQFGH---KVEDSIKADIKLILGIHNLGGMGSYLGL------PESLGGSKTKVFSFVRD 554 Query: 549 SVTYKINSWRNKLLFKAGRGTLIKSVVCAIPT*NMQTDLFTKTFCHDLDILSSNFWWGTT 370 + +IN W K L K G+ +IKSV +P M K L + FWW + Sbjct: 555 RLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWW--S 612 Query: 369 NHNDNNKIYL*NWTRCCDKKSNGGCGFKHTYAQSMTLISKFC*KLISERNLFWVKLLKCK 190 ++ D+ ++ W + C KS+GG GF++ + L++K +LI+ + + K+ K + Sbjct: 613 SNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGR 672 Query: 189 YFPNS 175 YF S Sbjct: 673 YFRKS 677