BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023251
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22720.3| unnamed protein product [Vitis vinifera]              140   1e-31
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...   138   4e-31
emb|CAN62168.1| hypothetical protein VITISV_005985 [Vitis vinifera]   138   4e-31
ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polyp...   125   5e-27
ref|XP_003569562.1| PREDICTED: DNA-directed RNA polymerase III s...   124   8e-27

>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score =  140 bits (353), Expect = 1e-31
 Identities = 71/113 (62%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
 Frame = +1

Query: 37  MVGQNGIMLAVNIISSHFGILVSKVCECLLRKGSLTIQNIVRFTELTPQQVKHSVLVLIQ 216
           M  Q G+ LAV++ISSHFG LV+KVC+CLLRKG+LT+ +++RFTEL PQQVK  +LVLIQ
Sbjct: 1   MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60

Query: 217 HNCVQAFSFRSDEDDQGGVPK-GTHYVVIFENILHRLRFAKFSSIVSEQLDKE 372
           HNCVQAF+ +  E   G  P+  T Y+ +F NILHR+RFAKF +IVSE+LDKE
Sbjct: 61  HNCVQAFAIQ-QEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKE 112


>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
           vinifera]
          Length = 511

 Score =  138 bits (348), Expect = 4e-31
 Identities = 69/113 (61%), Positives = 89/113 (78%), Gaps = 1/113 (0%)
 Frame = +1

Query: 37  MVGQNGIMLAVNIISSHFGILVSKVCECLLRKGSLTIQNIVRFTELTPQQVKHSVLVLIQ 216
           M  Q G+ LAV++ISSHFG LV+KVC+CLLRKG+LT+ +++RFTEL PQQVK  +LVLIQ
Sbjct: 1   MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60

Query: 217 HNCVQAFSFRSDEDDQGGVPK-GTHYVVIFENILHRLRFAKFSSIVSEQLDKE 372
           HNCVQAF+ + +       P+  T Y+ +F NILHR+RFAKF +IVSE+LDKE
Sbjct: 61  HNCVQAFAIQQE------APRVVTQYMALFHNILHRMRFAKFLAIVSEELDKE 107


>emb|CAN62168.1| hypothetical protein VITISV_005985 [Vitis vinifera]
          Length = 721

 Score =  138 bits (348), Expect = 4e-31
 Identities = 70/113 (61%), Positives = 89/113 (78%), Gaps = 1/113 (0%)
 Frame = +1

Query: 37  MVGQNGIMLAVNIISSHFGILVSKVCECLLRKGSLTIQNIVRFTELTPQQVKHSVLVLIQ 216
           M  Q G+ LAV++ISSHFG LV+KVC+CLLRKG+ T+ +++RFTEL PQQVK  +LVLIQ
Sbjct: 1   MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTXTLASVIRFTELPPQQVKSCILVLIQ 60

Query: 217 HNCVQAFSFRSDEDDQGGVPK-GTHYVVIFENILHRLRFAKFSSIVSEQLDKE 372
           HNCVQAF+ +  E   G  P+  T Y+ +F NILHR+RFAKF +IVSE+LDKE
Sbjct: 61  HNCVQAFAIQ-QEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKE 112


>ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative
           [Ricinus communis] gi|223549895|gb|EEF51382.1|
           DNA-directed RNA polymerase III 62 kDa polypeptide,
           putative [Ricinus communis]
          Length = 485

 Score =  125 bits (313), Expect = 5e-27
 Identities = 62/108 (57%), Positives = 83/108 (76%)
 Frame = +1

Query: 46  QNGIMLAVNIISSHFGILVSKVCECLLRKGSLTIQNIVRFTELTPQQVKHSVLVLIQHNC 225
           Q+GI  A +II++HFG LV+KVC+CLLRKG LT+Q +V FTEL   QVK+S+LVLIQHNC
Sbjct: 5   QHGIKYATHIITNHFGNLVAKVCQCLLRKGPLTVQKVVEFTELNQTQVKNSLLVLIQHNC 64

Query: 226 VQAFSFRSDEDDQGGVPKGTHYVVIFENILHRLRFAKFSSIVSEQLDK 369
           VQA  +RS +D    +   THY+ +F+NILHR+RF+KF +I+S+   K
Sbjct: 65  VQA--YRSGDD----LKLTTHYIALFDNILHRVRFSKFLAIISQDFHK 106


>ref|XP_003569562.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
           [Brachypodium distachyon]
          Length = 505

 Score =  124 bits (311), Expect = 8e-27
 Identities = 66/110 (60%), Positives = 81/110 (73%), Gaps = 5/110 (4%)
 Frame = +1

Query: 37  MVGQNGIMLAVNIISSHFGILVSKVCECLLRKGSLTIQNIVRFTELTPQQVKHSVLVLIQ 216
           MV Q+GI+LAV IIS HFG LV+KVC+CLLR G L++Q IVR  EL+P QVK+S+LVLIQ
Sbjct: 1   MVSQHGILLAVGIISDHFGPLVAKVCDCLLRHGELSLQEIVRRLELSPGQVKNSLLVLIQ 60

Query: 217 HNCVQAFSFRSDEDDQGGVPKG-----THYVVIFENILHRLRFAKFSSIV 351
           HNCVQAFS           PKG     T Y+ IF+N+LHRLRF+KF S++
Sbjct: 61  HNCVQAFS----------APKGRDRTVTLYLAIFDNVLHRLRFSKFLSVI 100