BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023243
         (346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527312.1| pentatricopeptide repeat-containing protein,...    54   3e-10
emb|CBI18867.3| unnamed protein product [Vitis vinifera]               50   1e-09
ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containi...    50   1e-09
ref|XP_004139754.1| PREDICTED: pentatricopeptide repeat-containi...    46   4e-08
ref|XP_004161905.1| PREDICTED: pentatricopeptide repeat-containi...    46   4e-08

>ref|XP_002527312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533312|gb|EEF35064.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 802

 Score = 54.3 bits (129), Expect(2) = 3e-10
 Identities = 26/61 (42%), Positives = 38/61 (62%)
 Frame = +1

Query: 97  LHYTTKSITSCLQSEIVSALQVGDRDRAFNFLTAFTCSNQLLKPDDFIHILNYCAT*PLP 276
           L Y  +S    +Q +I+ AL +G+R RA N L+    +N LL+P+DF+ IL YCA  P P
Sbjct: 49  LGYGEESTVKSIQKQILDALNLGERGRASNMLSDLGHANNLLRPNDFVDILRYCARSPDP 108

Query: 277 I 279
           +
Sbjct: 109 L 109



 Score = 35.0 bits (79), Expect(2) = 3e-10
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +3

Query: 270 SPDTWFFMETWKIMEEKEI 326
           SPD  F METW+IMEEKEI
Sbjct: 105 SPDPLFAMETWRIMEEKEI 123


>emb|CBI18867.3| unnamed protein product [Vitis vinifera]
          Length = 804

 Score = 49.7 bits (117), Expect(2) = 1e-09
 Identities = 26/59 (44%), Positives = 36/59 (61%)
 Frame = +1

Query: 103 YTTKSITSCLQSEIVSALQVGDRDRAFNFLTAFTCSNQLLKPDDFIHILNYCAT*PLPI 279
           Y  KSIT  LQ +IV AL+  +R RA + L+     N  L+ DDFI+IL +C+  P P+
Sbjct: 51  YGRKSITRLLQVQIVDALRSNERSRASSLLSELGRGNYSLRADDFIYILEHCSKSPDPL 109



 Score = 37.7 bits (86), Expect(2) = 1e-09
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +3

Query: 270 SPDTWFFMETWKIMEEKEIEMDTRC 344
           SPD  F ME W+IM+EKE+ ++ RC
Sbjct: 105 SPDPLFVMEIWRIMDEKEVHVNNRC 129


>ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g76280-like [Vitis vinifera]
          Length = 728

 Score = 49.7 bits (117), Expect(2) = 1e-09
 Identities = 26/59 (44%), Positives = 36/59 (61%)
 Frame = +1

Query: 103 YTTKSITSCLQSEIVSALQVGDRDRAFNFLTAFTCSNQLLKPDDFIHILNYCAT*PLPI 279
           Y  KSIT  LQ +IV AL+  +R RA + L+     N  L+ DDFI+IL +C+  P P+
Sbjct: 15  YGRKSITRLLQVQIVDALRSNERSRASSLLSELGRGNYSLRADDFIYILEHCSKSPDPL 73



 Score = 37.7 bits (86), Expect(2) = 1e-09
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +3

Query: 270 SPDTWFFMETWKIMEEKEIEMDTRC 344
           SPD  F ME W+IM+EKE+ ++ RC
Sbjct: 69  SPDPLFVMEIWRIMDEKEVHVNNRC 93


>ref|XP_004139754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g76280-like [Cucumis sativus]
          Length = 834

 Score = 46.2 bits (108), Expect(2) = 4e-08
 Identities = 23/53 (43%), Positives = 33/53 (62%)
 Frame = +1

Query: 121 TSCLQSEIVSALQVGDRDRAFNFLTAFTCSNQLLKPDDFIHILNYCAT*PLPI 279
           T+ +Q +IV+AL++GDR RA N L         L  D+F+ IL+YCA  P P+
Sbjct: 69  TAFMQMQIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPL 121



 Score = 35.8 bits (81), Expect(2) = 4e-08
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +3

Query: 270 SPDTWFFMETWKIMEEKEIEMDTRC 344
           SPD  F METWKIMEE+ I ++  C
Sbjct: 117 SPDPLFVMETWKIMEERGIFLNNTC 141


>ref|XP_004161905.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g76280-like [Cucumis sativus]
          Length = 806

 Score = 46.2 bits (108), Expect(2) = 4e-08
 Identities = 23/53 (43%), Positives = 33/53 (62%)
 Frame = +1

Query: 121 TSCLQSEIVSALQVGDRDRAFNFLTAFTCSNQLLKPDDFIHILNYCAT*PLPI 279
           T+ +Q +IV+AL++GDR RA N L         L  D+F+ IL+YCA  P P+
Sbjct: 69  TAFMQMQIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPL 121



 Score = 35.8 bits (81), Expect(2) = 4e-08
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +3

Query: 270 SPDTWFFMETWKIMEEKEIEMDTRC 344
           SPD  F METWKIMEE+ I ++  C
Sbjct: 117 SPDPLFVMETWKIMEERGIFLNNTC 141