BLASTX nr result
ID: Coptis24_contig00023243
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00023243 (346 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002527312.1| pentatricopeptide repeat-containing protein,... 54 3e-10 emb|CBI18867.3| unnamed protein product [Vitis vinifera] 50 1e-09 ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containi... 50 1e-09 ref|XP_004139754.1| PREDICTED: pentatricopeptide repeat-containi... 46 4e-08 ref|XP_004161905.1| PREDICTED: pentatricopeptide repeat-containi... 46 4e-08 >ref|XP_002527312.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223533312|gb|EEF35064.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 802 Score = 54.3 bits (129), Expect(2) = 3e-10 Identities = 26/61 (42%), Positives = 38/61 (62%) Frame = +1 Query: 97 LHYTTKSITSCLQSEIVSALQVGDRDRAFNFLTAFTCSNQLLKPDDFIHILNYCAT*PLP 276 L Y +S +Q +I+ AL +G+R RA N L+ +N LL+P+DF+ IL YCA P P Sbjct: 49 LGYGEESTVKSIQKQILDALNLGERGRASNMLSDLGHANNLLRPNDFVDILRYCARSPDP 108 Query: 277 I 279 + Sbjct: 109 L 109 Score = 35.0 bits (79), Expect(2) = 3e-10 Identities = 15/19 (78%), Positives = 16/19 (84%) Frame = +3 Query: 270 SPDTWFFMETWKIMEEKEI 326 SPD F METW+IMEEKEI Sbjct: 105 SPDPLFAMETWRIMEEKEI 123 >emb|CBI18867.3| unnamed protein product [Vitis vinifera] Length = 804 Score = 49.7 bits (117), Expect(2) = 1e-09 Identities = 26/59 (44%), Positives = 36/59 (61%) Frame = +1 Query: 103 YTTKSITSCLQSEIVSALQVGDRDRAFNFLTAFTCSNQLLKPDDFIHILNYCAT*PLPI 279 Y KSIT LQ +IV AL+ +R RA + L+ N L+ DDFI+IL +C+ P P+ Sbjct: 51 YGRKSITRLLQVQIVDALRSNERSRASSLLSELGRGNYSLRADDFIYILEHCSKSPDPL 109 Score = 37.7 bits (86), Expect(2) = 1e-09 Identities = 14/25 (56%), Positives = 19/25 (76%) Frame = +3 Query: 270 SPDTWFFMETWKIMEEKEIEMDTRC 344 SPD F ME W+IM+EKE+ ++ RC Sbjct: 105 SPDPLFVMEIWRIMDEKEVHVNNRC 129 >ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like [Vitis vinifera] Length = 728 Score = 49.7 bits (117), Expect(2) = 1e-09 Identities = 26/59 (44%), Positives = 36/59 (61%) Frame = +1 Query: 103 YTTKSITSCLQSEIVSALQVGDRDRAFNFLTAFTCSNQLLKPDDFIHILNYCAT*PLPI 279 Y KSIT LQ +IV AL+ +R RA + L+ N L+ DDFI+IL +C+ P P+ Sbjct: 15 YGRKSITRLLQVQIVDALRSNERSRASSLLSELGRGNYSLRADDFIYILEHCSKSPDPL 73 Score = 37.7 bits (86), Expect(2) = 1e-09 Identities = 14/25 (56%), Positives = 19/25 (76%) Frame = +3 Query: 270 SPDTWFFMETWKIMEEKEIEMDTRC 344 SPD F ME W+IM+EKE+ ++ RC Sbjct: 69 SPDPLFVMEIWRIMDEKEVHVNNRC 93 >ref|XP_004139754.1| PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like [Cucumis sativus] Length = 834 Score = 46.2 bits (108), Expect(2) = 4e-08 Identities = 23/53 (43%), Positives = 33/53 (62%) Frame = +1 Query: 121 TSCLQSEIVSALQVGDRDRAFNFLTAFTCSNQLLKPDDFIHILNYCAT*PLPI 279 T+ +Q +IV+AL++GDR RA N L L D+F+ IL+YCA P P+ Sbjct: 69 TAFMQMQIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPL 121 Score = 35.8 bits (81), Expect(2) = 4e-08 Identities = 15/25 (60%), Positives = 18/25 (72%) Frame = +3 Query: 270 SPDTWFFMETWKIMEEKEIEMDTRC 344 SPD F METWKIMEE+ I ++ C Sbjct: 117 SPDPLFVMETWKIMEERGIFLNNTC 141 >ref|XP_004161905.1| PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like [Cucumis sativus] Length = 806 Score = 46.2 bits (108), Expect(2) = 4e-08 Identities = 23/53 (43%), Positives = 33/53 (62%) Frame = +1 Query: 121 TSCLQSEIVSALQVGDRDRAFNFLTAFTCSNQLLKPDDFIHILNYCAT*PLPI 279 T+ +Q +IV+AL++GDR RA N L L D+F+ IL+YCA P P+ Sbjct: 69 TAFMQMQIVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPL 121 Score = 35.8 bits (81), Expect(2) = 4e-08 Identities = 15/25 (60%), Positives = 18/25 (72%) Frame = +3 Query: 270 SPDTWFFMETWKIMEEKEIEMDTRC 344 SPD F METWKIMEE+ I ++ C Sbjct: 117 SPDPLFVMETWKIMEERGIFLNNTC 141