BLASTX nr result
ID: Coptis24_contig00023201
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00023201
(378 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002307065.1| predicted protein [Populus trichocarpa] gi|2... 181 5e-44
ref|XP_002515604.1| Williams-Beuren syndrome chromosome region 1... 170 1e-40
ref|NP_680156.2| regulator of chromosome condensation repeat-con... 170 1e-40
ref|XP_002873378.1| hypothetical protein ARALYDRAFT_487713 [Arab... 167 8e-40
ref|XP_003523201.1| PREDICTED: probable E3 ubiquitin-protein lig... 165 4e-39
>ref|XP_002307065.1| predicted protein [Populus trichocarpa] gi|222856514|gb|EEE94061.1|
predicted protein [Populus trichocarpa]
Length = 419
Score = 181 bits (459), Expect = 5e-44
Identities = 90/122 (73%), Positives = 98/122 (80%), Gaps = 6/122 (4%)
Frame = +1
Query: 31 RWMSTSG----KRVAALWGNGDYGRLGLGKLDSSWAPSIC--TSLENQNVQSISCGGAHT 192
RWMS+S KR AA+WGNGDYGRLG G LDS W P + +S N N++SISCGGAHT
Sbjct: 18 RWMSSSSSEGRKRSAAVWGNGDYGRLGYGNLDSMWRPKLMNSSSFHNSNLKSISCGGAHT 77
Query: 193 LFLTEAGRVYATGLNDFGQLGTSNETRYTLEPLEVSGLPKEIVRISAGYHHSSAITVDGE 372
LFLTE GRVYATGLNDFGQLG SN T Y +EPLEVSGL KEIV+ISAGYHHS AITVDGE
Sbjct: 78 LFLTETGRVYATGLNDFGQLGVSNNTTYCMEPLEVSGLKKEIVQISAGYHHSCAITVDGE 137
Query: 373 LY 378
LY
Sbjct: 138 LY 139
>ref|XP_002515604.1| Williams-Beuren syndrome chromosome region 16 protein, putative
[Ricinus communis] gi|223545242|gb|EEF46749.1|
Williams-Beuren syndrome chromosome region 16 protein,
putative [Ricinus communis]
Length = 374
Score = 170 bits (430), Expect = 1e-40
Identities = 84/123 (68%), Positives = 97/123 (78%), Gaps = 3/123 (2%)
Frame = +1
Query: 19 KSSSRWMST-SGKRVAALWGNGDYGRLGLGKLDSSWAPSICTS--LENQNVQSISCGGAH 189
KS RWMS+ +GKR AA+WGNGD+GRLG G LDS W P + S N +++SI+CGGAH
Sbjct: 8 KSYRRWMSSEAGKRYAAVWGNGDFGRLGTGSLDSQWRPKLLLSSCFANHSLKSIACGGAH 67
Query: 190 TLFLTEAGRVYATGLNDFGQLGTSNETRYTLEPLEVSGLPKEIVRISAGYHHSSAITVDG 369
TLFLTE G VYATGLNDFGQLG S YT EP++VSGL KEI++ISAGYHHS AITVDG
Sbjct: 68 TLFLTETGCVYATGLNDFGQLGISGNLSYTTEPVKVSGLQKEIMQISAGYHHSCAITVDG 127
Query: 370 ELY 378
ELY
Sbjct: 128 ELY 130
>ref|NP_680156.2| regulator of chromosome condensation repeat-containing protein
[Arabidopsis thaliana] gi|26452773|dbj|BAC43467.1|
unknown protein [Arabidopsis thaliana]
gi|28973187|gb|AAO63918.1| putative UVB-resistance
protein UVR8 [Arabidopsis thaliana]
gi|332003957|gb|AED91340.1| regulator of chromosome
condensation repeat-containing protein [Arabidopsis
thaliana]
Length = 434
Score = 170 bits (430), Expect = 1e-40
Identities = 77/118 (65%), Positives = 100/118 (84%), Gaps = 1/118 (0%)
Frame = +1
Query: 28 SRWMST-SGKRVAALWGNGDYGRLGLGKLDSSWAPSICTSLENQNVQSISCGGAHTLFLT 204
SRW+S+ SGKR AA+WG+GDYGRLGLG LDS W P++C++L + ++ +++CGGAHTLFLT
Sbjct: 39 SRWVSSESGKRFAAMWGSGDYGRLGLGNLDSQWTPAVCSALSDHSITAVACGGAHTLFLT 98
Query: 205 EAGRVYATGLNDFGQLGTSNETRYTLEPLEVSGLPKEIVRISAGYHHSSAITVDGELY 378
E RV+ATGLND GQLG S+ + ++PLEVSGL K+I+ ISAGY+HS+AITVDGELY
Sbjct: 99 ETRRVFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAGYYHSAAITVDGELY 156
Score = 56.2 bits (134), Expect = 3e-06
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Frame = +1
Query: 61 AALWGNGDYGRLGLGKLDSSWAPSICTSLENQNVQSISCGGAHTLFLTEAGRVYATGLND 240
A ++G ++G G + ++ PSI + E + ++CGG HT +T G +Y G N+
Sbjct: 270 AFMFGEKSINKMGFGGVRNATTPSIIS--EVPYAEEVACGGYHTCVVTRGGELYTWGSNE 327
Query: 241 FGQLGTSNETRYTLEPLEVSG--LPKEIVRISAGYHHSSAIT 360
G LGT + T + P+ V G L + ++S G+ H++AI+
Sbjct: 328 NGCLGT-DSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAIS 368
>ref|XP_002873378.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp.
lyrata] gi|297319215|gb|EFH49637.1| hypothetical protein
ARALYDRAFT_487713 [Arabidopsis lyrata subsp. lyrata]
Length = 434
Score = 167 bits (423), Expect = 8e-40
Identities = 77/120 (64%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Frame = +1
Query: 22 SSSRWMST-SGKRVAALWGNGDYGRLGLGKLDSSWAPSICTSLENQNVQSISCGGAHTLF 198
S RW+S SGKR AA+WG+GDYGRLGLG LDS W P+ C++L + ++++++CGGAHTLF
Sbjct: 37 SCRRWLSNESGKRFAAMWGSGDYGRLGLGNLDSQWTPAGCSALSDHSIRAVACGGAHTLF 96
Query: 199 LTEAGRVYATGLNDFGQLGTSNETRYTLEPLEVSGLPKEIVRISAGYHHSSAITVDGELY 378
LTE RV+ATGLND GQLG S+ + ++PLEVSGL K+I+ ISAGY+HS+AITVDGELY
Sbjct: 97 LTETRRVFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAGYYHSAAITVDGELY 156
Score = 56.2 bits (134), Expect = 3e-06
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Frame = +1
Query: 61 AALWGNGDYGRLGLGKLDSSWAPSICTSLENQNVQSISCGGAHTLFLTEAGRVYATGLND 240
A ++G ++G G + ++ PSI + E + ++CGG HT +T G +Y G N+
Sbjct: 270 AFMFGERSINKMGFGGVRNATTPSIIS--EVPYAEGVACGGYHTCVVTRGGELYTWGSNE 327
Query: 241 FGQLGTSNETRYTLEPLEVSG--LPKEIVRISAGYHHSSAIT 360
G LGT + T + P+ V G L + ++S G+ H++AI+
Sbjct: 328 NGCLGT-DSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAIS 368
>ref|XP_003523201.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
max]
Length = 417
Score = 165 bits (417), Expect = 4e-39
Identities = 80/123 (65%), Positives = 95/123 (77%)
Frame = +1
Query: 10 LGFKSSSRWMSTSGKRVAALWGNGDYGRLGLGKLDSSWAPSICTSLENQNVQSISCGGAH 189
LGF + S + +GKR AALWGNGDYGRLGLG LDS W P +C + N+ + +I+CGGAH
Sbjct: 18 LGFPTRS-FSRDAGKRFAALWGNGDYGRLGLGNLDSQWKPVVCPAFRNKTLNAIACGGAH 76
Query: 190 TLFLTEAGRVYATGLNDFGQLGTSNETRYTLEPLEVSGLPKEIVRISAGYHHSSAITVDG 369
TLFLTE G VYATGLNDFGQLG S Y++EPL V G K++V+ISAGY+HS AITVDG
Sbjct: 77 TLFLTEDGCVYATGLNDFGQLGVSESKHYSVEPLCVFGEEKKVVQISAGYNHSCAITVDG 136
Query: 370 ELY 378
ELY
Sbjct: 137 ELY 139