BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023094
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003593079.1| Pentatricopeptide repeat-containing protein ...    98   6e-19
ref|XP_003610566.1| Pentatricopeptide repeat-containing protein ...    97   1e-18
ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    96   4e-18
ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containi...    96   4e-18
ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containi...    96   4e-18

>ref|XP_003593079.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124360447|gb|ABN08457.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355482127|gb|AES63330.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 558

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 45/95 (47%), Positives = 64/95 (67%)
 Frame = +3

Query: 3   SGLIDEGCEYFKLMVTKYNVEPCLEHWTCIIDMFGRVGRLEEAYCLMKSGLPERDDIGNL 182
           SGLI+EGC +F++M   Y +EP  EH+TC++D+ GR G+LE+AY L+K      D     
Sbjct: 424 SGLIEEGCRFFQIMTEMYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSAD----- 478

Query: 183 SDCAAIWGALLSACRVHVNVELGELASQQLSRLAP 287
              A  WG+LL+ACRV+ NVELGE+A++ L  + P
Sbjct: 479 ---ATTWGSLLAACRVYGNVELGEIAARHLFEIDP 510


>ref|XP_003610566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355511621|gb|AES92763.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 598

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 45/95 (47%), Positives = 64/95 (67%)
 Frame = +3

Query: 3   SGLIDEGCEYFKLMVTKYNVEPCLEHWTCIIDMFGRVGRLEEAYCLMKSGLPERDDIGNL 182
           SGLI+EGC +F++M   Y +EP  EH+TC++D+ GR G+LE+AY L+K      D     
Sbjct: 424 SGLIEEGCRFFQIMTGVYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSAD----- 478

Query: 183 SDCAAIWGALLSACRVHVNVELGELASQQLSRLAP 287
              A  WG+LL+ACRV+ NVELGE+A++ L  + P
Sbjct: 479 ---ATTWGSLLAACRVYGNVELGEIAARHLFEIDP 510


>ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 44/90 (48%), Positives = 66/90 (73%)
 Frame = +3

Query: 3   SGLIDEGCEYFKLMVTKYNVEPCLEHWTCIIDMFGRVGRLEEAYCLMKSGLPERDDIGNL 182
           SG++ EG EYF +M  KYN+ P L+H+ C++D+ GR G+L++AY  ++  +P R D    
Sbjct: 613 SGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQD-MPIRPD---- 667

Query: 183 SDCAAIWGALLSACRVHVNVELGELASQQL 272
              AAIWGALL+ACR+H NVELGE+A++++
Sbjct: 668 ---AAIWGALLNACRIHRNVELGEIAAKRV 694


>ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 44/90 (48%), Positives = 66/90 (73%)
 Frame = +3

Query: 3   SGLIDEGCEYFKLMVTKYNVEPCLEHWTCIIDMFGRVGRLEEAYCLMKSGLPERDDIGNL 182
           SG++ EG EYF +M  KYN+ P L+H+ C++D+ GR G+L++AY  ++  +P R D    
Sbjct: 613 SGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQD-MPIRPD---- 667

Query: 183 SDCAAIWGALLSACRVHVNVELGELASQQL 272
              AAIWGALL+ACR+H NVELGE+A++++
Sbjct: 668 ---AAIWGALLNACRIHRNVELGEIAAKRV 694


>ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 46/94 (48%), Positives = 65/94 (69%)
 Frame = +3

Query: 6   GLIDEGCEYFKLMVTKYNVEPCLEHWTCIIDMFGRVGRLEEAYCLMKSGLPERDDIGNLS 185
           G++ E  E+F LMV  Y+++P ++H+TC++D+ G  GR EEAY L+K G+P + D G   
Sbjct: 380 GMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIK-GMPMQPDSG--- 435

Query: 186 DCAAIWGALLSACRVHVNVELGELASQQLSRLAP 287
               IWGALL+ C++H NVELGELA Q+L  L P
Sbjct: 436 ----IWGALLNGCKIHKNVELGELALQKLIELEP 465