BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023015
         (363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003596984.1| Rhomboid family member [Medicago truncatula]...    47   1e-09
emb|CAN68680.1| hypothetical protein VITISV_041943 [Vitis vinifera]    53   2e-09

>ref|XP_003596984.1| Rhomboid family member [Medicago truncatula]
           gi|355486032|gb|AES67235.1| Rhomboid family member
           [Medicago truncatula]
          Length = 221

 Score = 46.6 bits (109), Expect(2) = 1e-09
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
 Frame = -1

Query: 363 HKYLRPGALAQLRDSKLSARSQKPNLKTQLALYKLIST--TPTSINYPTNNGVV--GFPC 196
           HK+L+PG LA+LRDSK++ARS + N  +Q+++Y+  ++   P   + P    V   GFP 
Sbjct: 14  HKFLKPGTLARLRDSKITARSHRLNSLSQISIYRPPASPPPPPPSDQPQTTAVSADGFPS 73

Query: 195 F 193
           F
Sbjct: 74  F 74



 Score = 40.8 bits (94), Expect(2) = 1e-09
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = -3

Query: 133 PCFTRRLYTNPCCPQRRKVVAAKSCYFTPPSPELSDALNTNFD 5
           P F   +Y  P CPQR+K+VAAKS +F P SP  +D+ +   +
Sbjct: 72  PSFFSGIY-GPRCPQRKKLVAAKSVFFVPGSPAAADSADLGLE 113


>emb|CAN68680.1| hypothetical protein VITISV_041943 [Vitis vinifera]
          Length = 124

 Score = 52.8 bits (125), Expect(2) = 2e-09
 Identities = 28/60 (46%), Positives = 41/60 (68%)
 Frame = -1

Query: 363 HKYLRPGALAQLRDSKLSARSQKPNLKTQLALYKLISTTPTSINYPTNNGVVGFPCFTRR 184
           H+YL+PGALAQLRDS++SARS + +  +Q+ L++  S+ P+S   P    +  FPCF  R
Sbjct: 20  HRYLKPGALAQLRDSRISARSHRVDSHSQIHLHR-TSSPPSS---PLPPQIDAFPCFAGR 75



 Score = 33.9 bits (76), Expect(2) = 2e-09
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = -3

Query: 133 PCFTRRLYTNPCCPQRRKVVAAKSCYFTPPSP 38
           PCF  R Y  P C QR+K+VAAKS +    SP
Sbjct: 70  PCFAGRNY-GPRCLQRKKLVAAKSVFLKSSSP 100