BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022998
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...    57   4e-10
ref|XP_002447531.1| hypothetical protein SORBIDRAFT_06g002845 [S...    47   2e-09
gb|EEC76821.1| hypothetical protein OsI_14959 [Oryza sativa Indi...    45   2e-09
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    52   2e-09
ref|XP_002467234.1| hypothetical protein SORBIDRAFT_01g021750 [S...    44   5e-09

>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score = 57.0 bits (136), Expect(2) = 4e-10
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
 Frame = +2

Query: 95  PNGHIIERLDRAMTTDAWLLAFPRMQVTNLVNATSDHLSIMINLNKKNDNRNEHDKPFKF 274
           P+  I ERLDR +  D W   FP  +V +L    SDH  +++     ND+    +K FKF
Sbjct: 188 PSTLIRERLDRMLANDEWCDNFPSWEVVHLPRYRSDHAPLLLKTG-VNDSFRRGNKLFKF 246

Query: 275 YNMWFSDTTCMPIIDTVWN-SIMHDMSN 355
             MW S   C  I++  WN S   D++N
Sbjct: 247 EAMWLSKEECGKIVEEAWNGSAGEDITN 274



 Score = 32.0 bits (71), Expect(2) = 4e-10
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 12  FNDLINDFGLIDLGYKGPKYTWSNKRAPRMVI 107
           F ++I+D  + DLGY G ++TW    +P  +I
Sbjct: 161 FREVIDDCAVKDLGYVGNRFTWQRGNSPSTLI 192


>ref|XP_002447531.1| hypothetical protein SORBIDRAFT_06g002845 [Sorghum bicolor]
           gi|241938714|gb|EES11859.1| hypothetical protein
           SORBIDRAFT_06g002845 [Sorghum bicolor]
          Length = 993

 Score = 46.6 bits (109), Expect(2) = 2e-09
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +2

Query: 113 ERLDRAMTTDAWLLAFPRMQVTNLVNATSDHLSIMINLNKKNDNRNEHDKPFKFYNMWFS 292
           +RLDR +    W +A+PR  V +L    SDH  I+  L   +  R+ ++K F+F N W  
Sbjct: 225 QRLDRCLANAEWCMAYPRTTVYHLPMRRSDHAPILTML---DSTRHHNNKIFRFKNWWLM 281

Query: 293 DTTCMPIIDTVW 328
           +   M +    W
Sbjct: 282 EQDYMQVAKESW 293



 Score = 40.0 bits (92), Expect(2) = 2e-09
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 12  FNDLINDFGLIDLGYKGPKYTWSNKR 89
           F D +   G +DLGY GP YTW+NKR
Sbjct: 192 FCDYVKQCGFLDLGYSGPAYTWTNKR 217


>gb|EEC76821.1| hypothetical protein OsI_14959 [Oryza sativa Indica Group]
          Length = 405

 Score = 44.7 bits (104), Expect(2) = 2e-09
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = +2

Query: 107 IIERLDRAMTTDAWLLAFPRMQVTNLVNATSDHLSIMINLNKKNDNRNEHDKPFKFYNMW 286
           ++ERLDR +    W + FP   V +L    SDH  I+  LN  +   +   K FKF N W
Sbjct: 58  VLERLDRCLANVEWCMLFPHTTVYHLPMLYSDHAPIIAILNPIH---HHPKKSFKFENWW 114

Query: 287 FSDTTCMPIIDTVWNSI 337
            S+          W++I
Sbjct: 115 ISEKDFQKEAQAGWSAI 131



 Score = 42.0 bits (97), Expect(2) = 2e-09
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +3

Query: 3   VLEFNDLINDFGLIDLGYKGPKYTWSNKR 89
           + +F   I++ GLIDLGY GP YTWSNK+
Sbjct: 24  ISQFPRHIHNLGLIDLGYNGPAYTWSNKK 52


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 51.6 bits (122), Expect(2) = 2e-09
 Identities = 27/78 (34%), Positives = 38/78 (48%)
 Frame = +2

Query: 98  NGHIIERLDRAMTTDAWLLAFPRMQVTNLVNATSDHLSIMINLNKKNDNRNEHDKPFKFY 277
           N  I ++LDR +  D WL +FPR          SDHL   INLN       +  +PFKF 
Sbjct: 83  NDLIAKKLDRVLVNDVWLQSFPRSYSVFEAGGCSDHLRCRINLNVGAGAVVKGKRPFKFV 142

Query: 278 NMWFSDTTCMPIIDTVWN 331
           N+       +P +++ WN
Sbjct: 143 NVITEMEHFIPTVESYWN 160



 Score = 34.7 bits (78), Expect(2) = 2e-09
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 9   EFNDLINDFGLIDLGYKGPKYTWSNKRAPRMVISLKD 119
           +F   +N   + DL Y GP +TWSNKR   ++    D
Sbjct: 55  DFQMAVNHCSITDLAYHGPLFTWSNKRENDLIAKKLD 91


>ref|XP_002467234.1| hypothetical protein SORBIDRAFT_01g021750 [Sorghum bicolor]
           gi|241921088|gb|EER94232.1| hypothetical protein
           SORBIDRAFT_01g021750 [Sorghum bicolor]
          Length = 426

 Score = 43.9 bits (102), Expect(2) = 5e-09
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = +2

Query: 113 ERLDRAMTTDAWLLAFPRMQVTNLVNATSDHLSIMINLNKKNDNRNEHDKPFKFYNMWFS 292
           ERLDR +    W + +PR  V +L    SDH  I+  L   + N   + KPF+F N W  
Sbjct: 199 ERLDRCLANAEWCMMYPRTTVYHLPMLRSDHTPILALL---DSNTYNNTKPFRFENWWLM 255

Query: 293 D 295
           +
Sbjct: 256 E 256



 Score = 41.2 bits (95), Expect(2) = 5e-09
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +3

Query: 12  FNDLINDFGLIDLGYKGPKYTWSNKR 89
           F D + + G IDLGY GP YTW+NKR
Sbjct: 166 FCDSVKECGFIDLGYSGPAYTWTNKR 191