BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022992
         (1166 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003577233.1| PREDICTED: splicing factor U2af large subuni...   133   7e-29
sp|Q2QKB4.1|U2A2B_WHEAT RecName: Full=Splicing factor U2af large...   130   8e-28
gb|EEC74054.1| hypothetical protein OsI_09051 [Oryza sativa Indi...   130   8e-28
ref|NP_001068459.1| Os11g0682300 [Oryza sativa Japonica Group] g...   130   8e-28
gb|ABG22574.1| transposon protein, putative, CACTA, En/Spm sub-c...   130   8e-28

>ref|XP_003577233.1| PREDICTED: splicing factor U2af large subunit B-like [Brachypodium
           distachyon]
          Length = 446

 Score =  133 bits (335), Expect = 7e-29
 Identities = 95/253 (37%), Positives = 133/253 (52%), Gaps = 4/253 (1%)
 Frame = -2

Query: 841 SRHARRVFVGGLPKVANKQSLANFFNLFMARIASIDASRERMYDVVLDIYMNSDMDFAIV 662
           +RHARRV+VGGLP  AN+QS+A +FN  MA I    A      D VL++Y+N D  FA V
Sbjct: 200 TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPG---DAVLNVYINHDKKFAFV 256

Query: 661 EVSSVELASNAMALDGVVFEGSPLRIRRPNDYNPWLAAALGPTQPSCFLKLEVVPRQALD 482
           E+ SVE ASNAMALDG++FEG+P++     D      AAL   +     K   V R    
Sbjct: 257 EMRSVEEASNAMALDGILFEGAPVKDLNVTDI---ACAALNGIKMGD--KTLTVRRANQG 311

Query: 481 TLIDLDTKFGRTLQAQALQARIQHSYECDILPSRVLCLLKAVLLDIWDDQDSFS---QYL 311
           +      +    LQAQ      +  Y+   LP++V+CL + V  D   D + +    + +
Sbjct: 312 SAQPRPEQENILLQAQQQVQLQKLVYQVGALPTKVICLTQVVTADELKDDEEYEDIMEDM 371

Query: 310 RSEAETYGTLKDADSPR-LIFNEENSTVVTVFFEYTDIAGSVKAVKGINGRMLKNMRHIA 134
           R EA  YGTL     PR     E  + V  VF EY D+ GS KA   ++GR       +A
Sbjct: 372 RLEAGKYGTLVKVVIPRPHPSGEPVAGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVA 431

Query: 133 VYYPEEEYLNGDY 95
           V+YPE ++ + ++
Sbjct: 432 VFYPENKFSDEEF 444


>sp|Q2QKB4.1|U2A2B_WHEAT RecName: Full=Splicing factor U2af large subunit B; AltName:
           Full=U2 auxiliary factor 65 kDa subunit B; AltName:
           Full=U2 small nuclear ribonucleoprotein auxiliary factor
           large subunit B; Short=U2 snRNP auxiliary factor large
           subunit B gi|68036764|gb|AAY84880.1| U2AF large subunit
           [Triticum aestivum]
          Length = 543

 Score =  130 bits (326), Expect = 8e-28
 Identities = 68/114 (59%), Positives = 84/114 (73%)
 Frame = -2

Query: 841 SRHARRVFVGGLPKVANKQSLANFFNLFMARIASIDASRERMYDVVLDIYMNSDMDFAIV 662
           +RHARRV+VGGLP  AN+QS+A +FN  MA I    A      D VL++Y+N D  FA V
Sbjct: 203 TRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPG---DAVLNVYINHDKKFAFV 259

Query: 661 EVSSVELASNAMALDGVVFEGSPLRIRRPNDYNPWLAAALGPTQPSCFLKLEVV 500
           E+ SVE ASNAMALDG++FEG+P+++RRP DYNP LAAALGP+QPS  L L  V
Sbjct: 260 EMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAV 313



 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 67/249 (26%), Positives = 99/249 (39%), Gaps = 5/249 (2%)
 Frame = -2

Query: 826 RVFVGGLPKVANKQSLANFFNLFMARIASIDASRERMYDVVLDIYMNSDMDFAIVEVSSV 647
           R+FVGGLP    +  +      F            R +D+V D    +   +A      +
Sbjct: 328 RIFVGGLPYYFTEAQVRELLESF---------GPLRGFDLVKDRETGNSKGYAFCVYQDL 378

Query: 646 ELASNAMA-LDGVVFEGSPLRIRRPNDYNPWLAAALGPTQPSCFLKLEVVPRQALDTLID 470
            +   A A L+G+      L +RR N          G  QP          R   + ++ 
Sbjct: 379 NVTDIACAALNGIKMGDKTLTVRRANQ---------GSAQP----------RPEQENIL- 418

Query: 469 LDTKFGRTLQAQALQARIQHSYECDILPSRVLCLLKAVLLDIWDDQDSFSQYL---RSEA 299
                   LQAQ      +  Y+   LP++V+CL + V  D   D + +   +   R EA
Sbjct: 419 --------LQAQQQVQLQKLVYQVGALPTKVVCLTQVVTADELKDDEEYEDIMEDMRLEA 470

Query: 298 ETYGTLKDADSPRLI-FNEENSTVVTVFFEYTDIAGSVKAVKGINGRMLKNMRHIAVYYP 122
             YG L     PR     E  S V  VF EY D+ GS KA   ++GR       +AV+YP
Sbjct: 471 GKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 530

Query: 121 EEEYLNGDY 95
           E ++ + DY
Sbjct: 531 ENKFADEDY 539


>gb|EEC74054.1| hypothetical protein OsI_09051 [Oryza sativa Indica Group]
          Length = 548

 Score =  130 bits (326), Expect = 8e-28
 Identities = 68/114 (59%), Positives = 84/114 (73%)
 Frame = -2

Query: 841 SRHARRVFVGGLPKVANKQSLANFFNLFMARIASIDASRERMYDVVLDIYMNSDMDFAIV 662
           +RHARRV+VGGLP  AN+QS+A +FN  MA I    A      D VL++Y+N D  FA V
Sbjct: 210 TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPG---DAVLNVYINHDKKFAFV 266

Query: 661 EVSSVELASNAMALDGVVFEGSPLRIRRPNDYNPWLAAALGPTQPSCFLKLEVV 500
           E+ SVE ASNAMALDG++FEG+P+++RRP DYNP LAAALGP+QPS  L L  V
Sbjct: 267 EMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAV 320



 Score = 61.6 bits (148), Expect = 4e-07
 Identities = 63/249 (25%), Positives = 100/249 (40%), Gaps = 5/249 (2%)
 Frame = -2

Query: 826 RVFVGGLPKVANKQSLANFFNLFMARIASIDASRERMYDVVLDIYMNSDMDFAIVEVSSV 647
           R+FVGGLP    +  +      F            R +D+V D    +   +A      +
Sbjct: 335 RIFVGGLPYYFTEAQVRELLESF---------GPLRGFDLVKDRETGNSKGYAFCVYQDL 385

Query: 646 ELASNAMA-LDGVVFEGSPLRIRRPNDYNPWLAAALGPTQPSCFLKLEVVPRQALDTLID 470
            +   A A L+G+      L +RR N      AA   P Q S  L+ +            
Sbjct: 386 NVTDIACAALNGIKMGDKTLTVRRANQG----AAQPRPEQESILLQAQ------------ 429

Query: 469 LDTKFGRTLQAQALQARIQHSYECDILPSRVLCLLKAVLLDIWDDQDSFSQYL---RSEA 299
                 + +Q Q L       Y+   LP++V+CL + V  D   D + +   +   R E+
Sbjct: 430 ------QQVQLQKLV------YQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLES 477

Query: 298 ETYGTLKDADSPRLIFNE-ENSTVVTVFFEYTDIAGSVKAVKGINGRMLKNMRHIAVYYP 122
             YG L     PR   +    + V  VF EY D+ G+ KA   ++GR       +AV+YP
Sbjct: 478 GKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYP 537

Query: 121 EEEYLNGDY 95
           E ++ + +Y
Sbjct: 538 ENKFASAEY 546


>ref|NP_001068459.1| Os11g0682300 [Oryza sativa Japonica Group]
           gi|113645681|dbj|BAF28822.1| Os11g0682300, partial
           [Oryza sativa Japonica Group]
          Length = 378

 Score =  130 bits (326), Expect = 8e-28
 Identities = 68/114 (59%), Positives = 84/114 (73%)
 Frame = -2

Query: 841 SRHARRVFVGGLPKVANKQSLANFFNLFMARIASIDASRERMYDVVLDIYMNSDMDFAIV 662
           +RHARRV+VGGLP  AN+QS+A +FN  MA I    A      D VL++Y+N D  FA V
Sbjct: 40  TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPG---DAVLNVYINHDKKFAFV 96

Query: 661 EVSSVELASNAMALDGVVFEGSPLRIRRPNDYNPWLAAALGPTQPSCFLKLEVV 500
           E+ SVE ASNAMALDG++FEG+P+++RRP DYNP LAAALGP+QPS  L L  V
Sbjct: 97  EMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAV 150



 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 64/249 (25%), Positives = 100/249 (40%), Gaps = 5/249 (2%)
 Frame = -2

Query: 826 RVFVGGLPKVANKQSLANFFNLFMARIASIDASRERMYDVVLDIYMNSDMDFAIVEVSSV 647
           R+FVGGLP    +  +      F            R +D+V D    +   +A      +
Sbjct: 165 RIFVGGLPYYFTEAQVRELLESF---------GPLRGFDLVKDRETGNSKGYAFCVYQDL 215

Query: 646 ELASNAMA-LDGVVFEGSPLRIRRPNDYNPWLAAALGPTQPSCFLKLEVVPRQALDTLID 470
            +   A A L+G+      L +RR N      AA   P Q S  L+ +            
Sbjct: 216 NVTDIACAALNGIKMGDKTLTVRRANQG----AAQPRPEQESILLQAQ------------ 259

Query: 469 LDTKFGRTLQAQALQARIQHSYECDILPSRVLCLLKAVLLDIWDDQDSFSQYL---RSEA 299
                 + +Q Q L       Y+   LP++V+CL + V  D   D + +   +   R EA
Sbjct: 260 ------QQVQLQKLV------YQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEA 307

Query: 298 ETYGTLKDADSPRLIFNE-ENSTVVTVFFEYTDIAGSVKAVKGINGRMLKNMRHIAVYYP 122
             YG L     PR   +    + V  VF EY D+ G+ KA   ++GR       +AV+YP
Sbjct: 308 GKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYP 367

Query: 121 EEEYLNGDY 95
           E ++ + +Y
Sbjct: 368 ENKFSSAEY 376


>gb|ABG22574.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
          Length = 366

 Score =  130 bits (326), Expect = 8e-28
 Identities = 68/114 (59%), Positives = 84/114 (73%)
 Frame = -2

Query: 841 SRHARRVFVGGLPKVANKQSLANFFNLFMARIASIDASRERMYDVVLDIYMNSDMDFAIV 662
           +RHARRV+VGGLP  AN+QS+A +FN  MA I    A      D VL++Y+N D  FA V
Sbjct: 28  TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPG---DAVLNVYINHDKKFAFV 84

Query: 661 EVSSVELASNAMALDGVVFEGSPLRIRRPNDYNPWLAAALGPTQPSCFLKLEVV 500
           E+ SVE ASNAMALDG++FEG+P+++RRP DYNP LAAALGP+QPS  L L  V
Sbjct: 85  EMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAV 138



 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 64/249 (25%), Positives = 100/249 (40%), Gaps = 5/249 (2%)
 Frame = -2

Query: 826 RVFVGGLPKVANKQSLANFFNLFMARIASIDASRERMYDVVLDIYMNSDMDFAIVEVSSV 647
           R+FVGGLP    +  +      F            R +D+V D    +   +A      +
Sbjct: 153 RIFVGGLPYYFTEAQVRELLESF---------GPLRGFDLVKDRETGNSKGYAFCVYQDL 203

Query: 646 ELASNAMA-LDGVVFEGSPLRIRRPNDYNPWLAAALGPTQPSCFLKLEVVPRQALDTLID 470
            +   A A L+G+      L +RR N      AA   P Q S  L+ +            
Sbjct: 204 NVTDIACAALNGIKMGDKTLTVRRANQG----AAQPRPEQESILLQAQ------------ 247

Query: 469 LDTKFGRTLQAQALQARIQHSYECDILPSRVLCLLKAVLLDIWDDQDSFSQYL---RSEA 299
                 + +Q Q L       Y+   LP++V+CL + V  D   D + +   +   R EA
Sbjct: 248 ------QQVQLQKLV------YQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEA 295

Query: 298 ETYGTLKDADSPRLIFNE-ENSTVVTVFFEYTDIAGSVKAVKGINGRMLKNMRHIAVYYP 122
             YG L     PR   +    + V  VF EY D+ G+ KA   ++GR       +AV+YP
Sbjct: 296 GKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYP 355

Query: 121 EEEYLNGDY 95
           E ++ + +Y
Sbjct: 356 ENKFSSAEY 364